Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30616
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0239 + 22244565-22245144,22245249-22245594,22246847-222468...    29   5.2  

>03_05_0239 +
           22244565-22245144,22245249-22245594,22246847-22246868,
           22246982-22247054,22247131-22247233,22247312-22247366,
           22247448-22247542,22247913-22248204,22248292-22248495,
           22248583-22248615
          Length = 600

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = -1

Query: 687 KPWSLQASYCRGIGFGDVGNIS*FYMFEANGHRESPDFLYIEIVKPIL*LGAVITVHFML 508
           KPW++    C  +  GD+G+   +     +G R SPD   +    P L  G ++T    +
Sbjct: 467 KPWNIFLGPCGAVRIGDLGH-GCWSKSYCDGRRGSPDCGTMLYSAPELRNGLLVTDKVDV 525

Query: 507 YNL--IKCEIMSISISSIKVRLSS 442
           Y+L  I  EI   +  S+  R+ +
Sbjct: 526 YSLGVIYLEIFMPAAVSVNNRVDA 549


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,834,961
Number of Sequences: 37544
Number of extensions: 301467
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)