Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30614
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    27   0.23 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   3.8  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   3.8  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   6.6  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   8.7  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 459 CDDDY*CPSSAGYQDSSPN*PSFP-CRGPLACS*RPALWPPPCDT*TREMHTGHFLAPV 286
           C  +Y C  +    D+     S P CR  L CS   ALWP P    T E+H G  L  V
Sbjct: 29  CKSNY-CQKAPITPDTEATGLSLPACR--LFCSEAAALWPKP----TGEVHVGTTLVKV 80


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 656 SPANWPIHAWMA 621
           +PAN P+H+W A
Sbjct: 19  APANAPMHSWYA 30


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 656 SPANWPIHAWMA 621
           +PAN P+H+W A
Sbjct: 19  APANAPMHSWYA 30


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 609 RCRSCHPGMNGPVGWGF 659
           RC + +P +N P G GF
Sbjct: 517 RCPNNYPWVNDPTGDGF 533


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 251 NNVHRKTSVTLGSKLPT*RVFGWLSSP 171
           N++    S++ G +LP    FG ++SP
Sbjct: 38  NSITVPLSISTGQRLPANFSFGQVNSP 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,240
Number of Sequences: 336
Number of extensions: 4597
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)