Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30614
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 45 1e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 33 0.047
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 33 0.063
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.063
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 33 0.063
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 33 0.063
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 32 0.083
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 32 0.11
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 31 0.14
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 29 0.58
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 1.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.8
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.4
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 3.1
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 3.1
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 27 3.1
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 3.1
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 4.1
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 26 5.5
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 26 5.5
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 5.5
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 5.5
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 26 7.2
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 45.2 bits (102), Expect = 1e-05
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Frame = +3
Query: 249 VWQ-IGDVKGCKIIRE--PG-NDPYAFLEFTCHTAAATALAVMNKRVVLDKEM-KVNWAT 413
VW +G K+IR G N Y F+EF A++A+++ NK + + K+NWA+
Sbjct: 112 VWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWAS 171
Query: 414 SPGNQPKT-DTSNHHHIFVGDLSPEI 488
G + K+ ++ + IFVGDLSP +
Sbjct: 172 GGGLREKSISKASEYSIFVGDLSPNV 197
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 270 KGCKIIREPGNDP---YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWAT 413
K KI+ +P + Y F+ FT +ALA M ++ D+ ++V AT
Sbjct: 214 KSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLAT 264
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 521 FGEISNCRIVRDPQTLKSKGYAFV 592
+ + +I+ DPQT S+GY FV
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFV 233
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 33.1 bits (72), Expect = 0.047
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQ 610
F+ FG+I +C+++RD +T S YAF+ K+
Sbjct: 264 FSRFGKIISCQVIRDKETGDSLQYAFIEFDNKE 296
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 255 QIGDVKGCKIIR--EPGND-PYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGN 425
+ G + C++IR E G+ YAF+EF + A M ++ D + V+++ S
Sbjct: 266 RFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFSQSVAR 325
Query: 426 QPKTDTSN 449
+ SN
Sbjct: 326 YRQYYNSN 333
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 32.7 bits (71), Expect = 0.063
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F+ FG I +C + P T SKGY FVS
Sbjct: 441 FSKFGRIKSCTLASYPSTEISKGYGFVS 468
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 32.7 bits (71), Expect = 0.063
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F+ FGE + +VRD +T KSKG+AF+
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFL 77
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 32.7 bits (71), Expect = 0.063
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQ 610
R F +G I R+VR+ T KS GYAFV R++
Sbjct: 118 REFTRYGPIERIRVVRNKVTGKSMGYAFVVFERER 152
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 32.7 bits (71), Expect = 0.063
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F+ FG +++ RI+R+P T S+G+ F+S
Sbjct: 121 FSKFGTVTHVRIMREPVTKASRGFGFLS 148
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 32.3 bits (70), Expect = 0.083
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F FGE+ +C ++RD T +S+G+ F++
Sbjct: 183 FEQFGEVLDCTVMRDSTTGRSRGFGFLT 210
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
R F G I RIVRDP+T KG+A++
Sbjct: 288 RYFGDCGSIDYVRIVRDPKTNLGKGFAYI 316
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +1
Query: 193 TLYVGNLDPSVTEVFLCTLF 252
+LYVG LDPSVTE L LF
Sbjct: 81 SLYVGELDPSVTEAMLFELF 100
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 491 NKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
NK F+ FG+I +C++ D + +KGY FV
Sbjct: 181 NKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFV 213
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 29.5 bits (63), Expect = 0.58
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 166 NMGDESHP-KTLYVGNLDPSVTEVFLCTLF 252
N D++ P T+YVGNL PS +E L LF
Sbjct: 417 NPADQNPPCNTIYVGNLPPSTSEEELKVLF 446
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F FG I + +D +T ++KG+AFVS
Sbjct: 222 FRRFGGIQRVYLAKDKETGRAKGFAFVS 249
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
AF G+I + R+ DPQ+ + KG+ +V+
Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVT 413
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 178 ESHPKTLYVGNLDPSVTEVFLCTLF 252
E T++VGNL PSVTE L F
Sbjct: 2 ERRKATVHVGNLAPSVTESLLYNAF 26
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F+PFG I + + P + SKGY FV+
Sbjct: 404 FSPFGSILSSMLACYPNSGISKGYGFVA 431
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F+ G I + +V +P+T +++GY FV+
Sbjct: 25 FSDVGPIKHAVVVTNPETGENRGYGFVT 52
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 332 TRKLEKCIRVISWLPYNLATFYIAYLPNNVHRKTSVT 222
TRKLE ++WL L F+ + P+ R T +T
Sbjct: 211 TRKLENDSETVTWLNTFLQQFWYIFEPSLSERITEIT 247
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 261 GDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNW 407
G V CKII + +AFL F AA A+ + K ++V +
Sbjct: 390 GKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCGKTRSPHQKKPLRVEF 438
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F PFG+I + RD Q +SKG+ ++
Sbjct: 360 FEPFGDIEFVHLQRDDQN-RSKGFGYI 385
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 495 NILREPSLHLV-RYRTVA*YAILKRSNPRVMLLYHCKESRCRSCH 626
NI +E +LHLV R R I++ S + Y+C++ CR C+
Sbjct: 60 NIQKESTLHLVLRLRG----GIIEPSLKALASKYNCEKQICRKCY 100
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 495 NILREPSLHLV-RYRTVA*YAILKRSNPRVMLLYHCKESRCRSCH 626
NI +E +LHLV R R I++ S + Y+C++ CR C+
Sbjct: 60 NIQKESTLHLVLRLRG----GIIEPSLKALASKYNCEKQICRKCY 100
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F PFG++ + D +T KG+A++
Sbjct: 343 FGPFGQLEQVHMPIDKKTNNPKGFAYI 369
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 175 DESHPKTLYVGNLDPSVTEVFLCTL 249
D + T+Y+GNLD VT+ L L
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFEL 30
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAF 589
F G + ++V DP+T KGY F
Sbjct: 27 FNQVGPVKTFKLVLDPETGSGKGYGF 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,459,829
Number of Sequences: 5004
Number of extensions: 75088
Number of successful extensions: 241
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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