Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30614
(803 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 6e-17
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.029
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 36 0.038
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 35 0.067
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 35 0.067
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 35 0.089
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.21
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.47
SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0) 32 0.63
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.63
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.83
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 31 1.1
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 31 1.1
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 31 1.1
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 30 1.9
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 30 1.9
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 29 3.3
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 29 5.8
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 28 7.7
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 85.0 bits (201), Expect = 6e-17
Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = +3
Query: 216 PECHRSFPMYVVWQIGDVKGCKIIREPGND-PYAFLEFTCHTAAATALAVMNKRVVLDKE 392
P+C + + +I V CK+I P + PY F+EF H A A M++R V+DK+
Sbjct: 378 PKCTQELICSIFNKIAKVVRCKMINSPTDKGPYCFVEFETHADAQEAKFRMDQRTVMDKK 437
Query: 393 MKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILRE 509
+KVNWAT+ + DT+NH HIFVGDL+ ++ +LR+
Sbjct: 438 LKVNWATNHPGMKRGDTNNHFHIFVGDLAENVDNALLRK 476
Score = 36.3 bits (80), Expect = 0.029
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +1
Query: 178 ESHPKTLYVGNLDPSVTEVFLCTLFGK*AM*KVAR 282
E ++LYVGNLDP T+ +C++F K A KV R
Sbjct: 365 EEENRSLYVGNLDPKCTQELICSIFNKIA--KVVR 397
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 542 RIVRDPQTLKSKGYAFVSL*RKQ 610
R+V+DP KSKG+ FVS R++
Sbjct: 543 RVVKDPAKNKSKGFGFVSFVRRE 565
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 36.3 bits (80), Expect = 0.029
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 488 RNKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
R +H AF PFG I+ + DP +K KG+AFV
Sbjct: 114 REEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFV 148
Score = 32.7 bits (71), Expect = 0.36
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQ 610
F FG++ +C + ++P T K KGY F+ +Q
Sbjct: 219 FEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQ 251
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 35.9 bits (79), Expect = 0.038
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL 598
FA FGEI +++D T KSKGY FV++
Sbjct: 30 FAQFGEIREAVVIKDRVTKKSKGYGFVTM 58
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 35.1 bits (77), Expect = 0.067
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
RAFA + +IVRD ++ KSKGY FVS
Sbjct: 235 RAFAKYTSFLKAKIVRDKKSNKSKGYGFVS 264
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 35.1 bits (77), Expect = 0.067
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F FGE+ C ++RDP T +S+G+ F++
Sbjct: 128 FEKFGELKECVVMRDPVTKRSRGFGFLT 155
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 34.7 bits (76), Expect = 0.089
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +3
Query: 261 GDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNW 407
G+V I ++PGN+PYAF++F ++A A M++ V +KV +
Sbjct: 273 GEVIDVDIKKQPGNNPYAFVQFAELSSAIQARRKMDREYVGRNRVKVGF 321
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 33.5 bits (73), Expect = 0.21
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F FGEI C + DP T +S+G+ FV
Sbjct: 135 FTRFGEIDFCEVKLDPNTRRSRGFGFV 161
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 33.5 bits (73), Expect = 0.21
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F PFG + + +++ D +T +SKGY FV
Sbjct: 262 FEPFGTVDSVQLIYDSETNRSKGYGFV 288
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F+ G++S+ RI+ D + +SKG A++
Sbjct: 166 FSKVGQVSDVRIISDRNSRRSKGIAYI 192
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 33.1 bits (72), Expect = 0.27
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
+ F G +++C+++RD T +S GYAFV+
Sbjct: 45 KIFGTVGNVTSCKLIRDRATGQSLGYAFVN 74
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 32.7 bits (71), Expect = 0.36
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
+AF +G I NCR++RD T KG FV
Sbjct: 151 KAFEAYGNIVNCRLLRDKSTGLPKGCGFV 179
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 32.3 bits (70), Expect = 0.47
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 309 YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWA 410
Y F+EF A AL +NK++VL + + V+WA
Sbjct: 433 YCFVEFKKKEDARKALRGLNKKIVLSRALVVDWA 466
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 32.3 bits (70), Expect = 0.47
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 494 KHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
K+ F FG+I+ C++V D T SKG AFV
Sbjct: 430 KNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFV 462
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 309 YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWA 410
+ F++FT AA AL MN + +L + + V+WA
Sbjct: 292 FGFVQFTNVFDAAKALEEMNAKKILGRPVAVDWA 325
>SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 365
Score = 31.9 bits (69), Expect = 0.63
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 389 LVEDHSLVHDGQRCGRRRVTRKLEKCIRVISWLPYNLATFYIAYLP 252
LV D+S C RRRV R + K I+ + + TF+ ++P
Sbjct: 224 LVSDNSFSDSSDECERRRVQRCIRKRIKTTKNILLVVCTFFFCWMP 269
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 31.9 bits (69), Expect = 0.63
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 252 WQIGDVKGCKIIREPGNDPYAFLEFTCHTAA-ATALAVMNKRVVLDKEMKVNWATSPGNQ 428
+Q G+++ ++ AF+ FT AA A A NK ++ + +K+ W S G Q
Sbjct: 325 YQFGELRSISMVPRQN---CAFVCFTSRAAAEAAADRSFNKLILKGRRLKIMWGKSQGQQ 381
Query: 429 PKTDTSNHH 455
P H
Sbjct: 382 PAPGRQGGH 390
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 31.5 bits (68), Expect = 0.83
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 309 YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEI 488
Y F+EF A A+ VMN V K ++VN A++ + D ++F+G+L E+
Sbjct: 56 YGFVEFLGEEDADYAIKVMNMIKVYGKPIRVNKASA--HNKNLDVG--ANLFIGNLDTEV 111
Query: 489 ETNIL 503
+ +L
Sbjct: 112 DEKLL 116
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 31.5 bits (68), Expect = 0.83
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F FG+I +IVRD +T ++KGY +V
Sbjct: 73 FESFGDIEYVQIVRDHKTRENKGYGYV 99
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFV 592
AF PFG+I++ +I D T K +G+ FV
Sbjct: 24 AFIPFGDITDVQIPMDYTTSKHRGFGFV 51
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F+ FG I +C ++RD +T +S YAF+
Sbjct: 140 FSRFGTILSCEVIRDQKTGESLQYAFI 166
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQMPKL 622
F FG ++ R+ R ++ +SKGYAFV ++ K+
Sbjct: 118 FEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKI 154
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +3
Query: 300 NDPYAFLEFTCHTAAATA---LAVMNKRVVLDKEMKVNWATSPGNQPKTDTSNH-HHIFV 467
N +AFLE+ H AA+ A LA +V + + V+WA P +P D +++
Sbjct: 275 NRGFAFLEYESHQAASLARRRLASGRIKVWGNIVVTVDWA-DPQEEPDDDAMKKVKVVYL 333
Query: 468 GDLSPEIETNILRE 509
+LSP I L+E
Sbjct: 334 RNLSPSITEEKLKE 347
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 521 FGEISNCRIVRDPQTLKSKGYAFV 592
+GEI N +VRD +T K KG+ F+
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFL 25
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVSL 598
R F P+G+++ I+ D +T KSKG V L
Sbjct: 337 RYFRPYGQVAKVHILTDRETGKSKGCGVVKL 367
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 521 FGEISNCRIVRDPQTLKSKGYAFV 592
+GEI N +VRD +T K KG+ F+
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFL 25
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 488 RNKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F P G IS + +D T +SKG+AF++
Sbjct: 193 RESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFIN 228
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
+ F PFG + + ++ D QT SK + FVS
Sbjct: 280 QTFQPFGTVISAKVFIDKQTNMSKCFGFVS 309
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
+ F PFG + + ++ D QT SK + FVS
Sbjct: 295 QTFQPFGTVISAKVFIDKQTNMSKCFGFVS 324
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 491 NKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
N + F +G++ I+RD +T +S+G AF+
Sbjct: 23 NSDLHKVFERYGKVVKVTILRDKETRESRGVAFI 56
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 444 SNHHHIFVGDLSPEIETNILREPSLHLVRYRTVA*YAILKR 566
S + H+FV + P+I L++PSL V + +A +IL +
Sbjct: 442 STNAHLFVAKMMPDIVQLALQQPSLSQVHTQAMAQASILTK 482
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQ 610
+ F +G++ + I RD T +S+G+AFV K+
Sbjct: 34 QVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKR 68
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,150,760
Number of Sequences: 59808
Number of extensions: 572367
Number of successful extensions: 1384
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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