Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30614
(803 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 105 5e-23
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 86 3e-17
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 71 1e-12
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 59 3e-09
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 54 9e-08
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 49 3e-06
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 37 0.019
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 37 0.019
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 35 0.059
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 35 0.059
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 34 0.14
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 34 0.14
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 34 0.14
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 34 0.14
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 34 0.14
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.18
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.18
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 33 0.24
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 32 0.42
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 32 0.55
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 32 0.55
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 32 0.55
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 32 0.55
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 32 0.55
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 32 0.55
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 32 0.55
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 31 0.73
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 31 0.97
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 29 2.9
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 29 2.9
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 29 2.9
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81486-13|CAE47465.1| 611|Caenorhabditis elegans Hypothetical p... 29 3.9
Z81486-12|CAC42272.1| 585|Caenorhabditis elegans Hypothetical p... 29 3.9
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z78198-6|CAB01572.2| 848|Caenorhabditis elegans Hypothetical pr... 29 3.9
U55370-7|AAA97998.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.9
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 29 3.9
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 29 3.9
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 29 3.9
AY221631-1|AAP97492.1| 611|Caenorhabditis elegans muscarinic ac... 29 3.9
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 29 3.9
AL034391-3|CAE47471.1| 611|Caenorhabditis elegans Hypothetical ... 29 3.9
AL034391-2|CAA22301.2| 585|Caenorhabditis elegans Hypothetical ... 29 3.9
AF139093-1|AAD48771.1| 585|Caenorhabditis elegans muscarinic ac... 29 3.9
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 29 3.9
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 29 3.9
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 29 3.9
Z78539-8|CAE17715.1| 223|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z69661-7|CAE17832.1| 223|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 6.8
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 6.8
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 28 6.8
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 6.8
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 28 6.8
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 28 9.0
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 28 9.0
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 28 9.0
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 9.0
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 105 bits (251), Expect = 5e-23
Identities = 49/86 (56%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 QIGDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPG-NQP 431
QIG V K+I + NDPYAF+EF+ H A+ AL MNKR++LD+EMKVNWA PG Q
Sbjct: 68 QIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQQS 127
Query: 432 KTDTSNHHHIFVGDLSPEIETNILRE 509
K DT+ H H+FVGDLS E++ LRE
Sbjct: 128 KIDTTRHFHVFVGDLSSEVDNQKLRE 153
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/63 (39%), Positives = 38/63 (60%)
Frame = +2
Query: 491 NKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQMPKLPSRHEWASWLGIQDSI 670
N+ AF PFG++S+ +++RD T KSKGY FVS +++ + WLG + +I
Sbjct: 148 NQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLG-RRTI 206
Query: 671 RTN 679
RTN
Sbjct: 207 RTN 209
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +1
Query: 166 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGK 258
N DE P+TLYVGNLD +VTE F+ TLF +
Sbjct: 40 NGSDE--PRTLYVGNLDSTVTEDFIATLFNQ 68
Score = 35.1 bits (77), Expect = 0.059
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 261 GDVKGCKIIREPGNDP---YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWAT-SPGNQ 428
GDV K+IR+ Y F+ + A A+ MN + + + ++ NWAT PG+Q
Sbjct: 159 GDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQ 218
Query: 429 PKTDTSN 449
K N
Sbjct: 219 EKPSHYN 225
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 85.8 bits (203), Expect = 3e-17
Identities = 61/156 (39%), Positives = 81/156 (51%), Gaps = 9/156 (5%)
Frame = +3
Query: 255 QIGDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSP----G 422
QIG V KII E NDPYAF+EF+ H A AL N R +L+KEM V WA P
Sbjct: 62 QIGAVMKAKIIFEGLNDPYAFVEFSDHNQATLALQSHNGRELLEKEMHVTWAFEPREPGE 121
Query: 423 NQPKTDTSNHHHIFVGDLSPEIETNILREPSLHLVRYRTVA*YAILKRSNPRV-----ML 587
N+ K +TS H H+FVGDL EI++ LRE V++ V+ I++ +N +
Sbjct: 122 NRSKPETSRHFHVFVGDLCSEIDSTKLREA---FVKFGEVSEAKIIRDNNTNKGKGYGFV 178
Query: 588 LYHCKESRCRSCHPGMNGPVGWGFKIPYVRTWSTRK 695
Y +E R+ MNG W + W+TRK
Sbjct: 179 SYPRREDAERAIDE-MNG--AWLGRRTIRTNWATRK 211
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +1
Query: 187 PKTLYVGNLDPSVTEVFLCTLFGK 258
P+TL+V NLDP++T+ FL TLF +
Sbjct: 39 PRTLFVANLDPAITDEFLATLFNQ 62
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Frame = +3
Query: 363 MNKRVVLDKEMKVNWATSPG-NQPKTDTSNHHHIFVGDLSPEIETNILRE 509
MNKR++LD+EMKVNWA PG Q K DT+ H H+FVGDLS E++ LRE
Sbjct: 1 MNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLRE 50
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/63 (39%), Positives = 38/63 (60%)
Frame = +2
Query: 491 NKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQMPKLPSRHEWASWLGIQDSI 670
N+ AF PFG++S+ +++RD T KSKGY FVS +++ + WLG + +I
Sbjct: 45 NQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLG-RRTI 103
Query: 671 RTN 679
RTN
Sbjct: 104 RTN 106
Score = 35.1 bits (77), Expect = 0.059
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 261 GDVKGCKIIREPGNDP---YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWAT-SPGNQ 428
GDV K+IR+ Y F+ + A A+ MN + + + ++ NWAT PG+Q
Sbjct: 56 GDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQ 115
Query: 429 PKTDTSN 449
K N
Sbjct: 116 EKPSHYN 122
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +3
Query: 357 AVMNKRVVLDKEMKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILRE 509
+V +V+ D EMKVNWA PG Q K DT+ H H+FVGDLS E++ LRE
Sbjct: 71 SVTKTKVIFD-EMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLRE 121
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/63 (39%), Positives = 38/63 (60%)
Frame = +2
Query: 491 NKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQMPKLPSRHEWASWLGIQDSI 670
N+ AF PFG++S+ +++RD T KSKGY FVS +++ + WLG + +I
Sbjct: 116 NQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLG-RRTI 174
Query: 671 RTN 679
RTN
Sbjct: 175 RTN 177
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +1
Query: 166 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGK 258
N DE P+TLYVGNLD +VTE F+ TLF +
Sbjct: 40 NGSDE--PRTLYVGNLDSTVTEDFIATLFNQ 68
Score = 35.1 bits (77), Expect = 0.059
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 261 GDVKGCKIIREPGNDP---YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWAT-SPGNQ 428
GDV K+IR+ Y F+ + A A+ MN + + + ++ NWAT PG+Q
Sbjct: 127 GDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQ 186
Query: 429 PKTDTSN 449
K N
Sbjct: 187 EKPSHYN 193
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 54.4 bits (125), Expect = 9e-08
Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +3
Query: 393 MKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILRE 509
MKVNWA PG Q K DT+ H H+FVGDLS E++ LRE
Sbjct: 1 MKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLRE 40
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/63 (39%), Positives = 38/63 (60%)
Frame = +2
Query: 491 NKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQMPKLPSRHEWASWLGIQDSI 670
N+ AF PFG++S+ +++RD T KSKGY FVS +++ + WLG + +I
Sbjct: 35 NQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLG-RRTI 93
Query: 671 RTN 679
RTN
Sbjct: 94 RTN 96
Score = 35.1 bits (77), Expect = 0.059
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 261 GDVKGCKIIREPGNDP---YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWAT-SPGNQ 428
GDV K+IR+ Y F+ + A A+ MN + + + ++ NWAT PG+Q
Sbjct: 46 GDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQ 105
Query: 429 PKTDTSN 449
K N
Sbjct: 106 EKPSHYN 112
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +2
Query: 491 NKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQMPKLPSRHEWASWLGIQDSI 670
N+ F FGE+S +++RD QT KSKGY FVS KQ + W+G + ++
Sbjct: 148 NELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIG-KRAV 206
Query: 671 RTN 679
RTN
Sbjct: 207 RTN 209
Score = 41.5 bits (93), Expect = 7e-04
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Frame = +3
Query: 375 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREPSLHL--VRYRTVA* 548
+VL + ++ A+ P + + DTS H H+FVGDLS ++ +L+ V V
Sbjct: 109 IVLQESAVLHSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIR 168
Query: 549 YAILKRSNPRVMLLYHCKESRCRSCHPGMNGPVGWGFKIPYVRTWSTRKTTSE 707
++S + + K++ + GMNG W K W+ RK + E
Sbjct: 169 DVQTQKSKGYGFVSFPNKQN-AENAIAGMNGK--WIGKRAVRTNWAARKNSEE 218
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +3
Query: 255 QIGDVKGCKIIREPGNDP---YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGN 425
+ G+V K+IR+ Y F+ F A A+A MN + + + ++ NWA +
Sbjct: 157 KFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNS 216
Query: 426 QPKTDTSNHHHIF 464
+ D +F
Sbjct: 217 EENRDKLTFEQVF 229
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +1
Query: 166 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGK 258
N DE P+TLYVGNLD +VTE F+ TLF +
Sbjct: 40 NGSDE--PRTLYVGNLDSTVTEDFIATLFNQ 68
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 36.7 bits (81), Expect = 0.019
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F FGE++ C ++RDP T +++G+ F++
Sbjct: 65 FGRFGEVNECMVMRDPATKRARGFGFIT 92
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 36.7 bits (81), Expect = 0.019
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F FGE++ C ++RDP T +++G+ F++
Sbjct: 65 FGRFGEVNECMVMRDPATKRARGFGFIT 92
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 35.1 bits (77), Expect = 0.059
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQ 610
F GEI +C++VRD T +S GY FV+ R++
Sbjct: 62 FTSIGEIESCKLVRDKVTGQSLGYGFVNYVREE 94
Score = 32.3 bits (70), Expect = 0.42
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL 598
F+ FG I N +I+RD T + KGYAFVS+
Sbjct: 394 FSQFGAIVNVKILRD-LTQQCKGYAFVSM 421
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +3
Query: 258 IGDVKGCKIIRE--PGND-PYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQ 428
IG+++ CK++R+ G Y F+ + A A++ N + +K +KV++A +Q
Sbjct: 65 IGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQ 124
Query: 429 PK 434
K
Sbjct: 125 IK 126
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL*RK 607
F PFG+I RI+ D T SKG FV +K
Sbjct: 148 FRPFGQIITSRILSDNVTGLSKGVGFVRFDKK 179
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 35.1 bits (77), Expect = 0.059
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F+ +GE+ N ++RD T KSKG+AF+
Sbjct: 58 FSQYGEVMNINLIRDKDTGKSKGFAFL 84
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
++ FGEI++ ++RDP T +S+G+ FV+
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVT 70
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
++ FGEI++ ++RDP T +S+G+ FV+
Sbjct: 5 YSQFGEITDIIVMRDPTTKRSRGFGFVT 32
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
++ FGEI++ ++RDP T +S+G+ FV+
Sbjct: 5 YSQFGEITDIIVMRDPTTKRSRGFGFVT 32
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
++ FGEI++ ++RDP T +S+G+ FV+
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVT 70
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
++ FGEI++ ++RDP T +S+G+ FV+
Sbjct: 43 YSQFGEITDIIVMRDPTTKRSRGFGFVT 70
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +3
Query: 309 YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEI 488
+ F+EF A A+ ++N + K +KVN A++ ++ D + IFVG+L PE+
Sbjct: 56 FGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASA--HEKNMDVGAN--IFVGNLDPEV 111
Query: 489 ETNIL 503
+ +L
Sbjct: 112 DEKLL 116
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +3
Query: 309 YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEI 488
+ F+EF A A+ ++N + K +KVN A++ ++ D + IFVG+L PE+
Sbjct: 66 FGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASA--HEKNMDVGAN--IFVGNLDPEV 121
Query: 489 ETNIL 503
+ +L
Sbjct: 122 DEKLL 126
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F+ FG+I+NC IVRD ++ S YAF+
Sbjct: 261 FSRFGKINNCEIVRDRRSGDSLQYAFI 287
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F+ FG+I+NC IVRD ++ S YAF+
Sbjct: 261 FSRFGKINNCEIVRDRRSGDSLQYAFI 287
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F+ FG+I+NC IVRD ++ S YAF+
Sbjct: 192 FSRFGKINNCEIVRDRRSGDSLQYAFI 218
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
+AF + ++VR+ +T KSKGY FVS
Sbjct: 221 KAFRKYPSFQKAKVVRESRTNKSKGYGFVS 250
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 31.9 bits (69), Expect = 0.55
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F +G + +C I+RD T SKG FV+
Sbjct: 73 RLFEKYGSVFSCNILRDKSTQASKGCCFVT 102
Score = 31.5 bits (68), Expect = 0.73
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
FA FG I +C ++RD Q KS+G AFV+
Sbjct: 162 FAKFGHIEDCSVLRD-QDGKSRGCAFVT 188
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 31.9 bits (69), Expect = 0.55
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F +G + +C I+RD T SKG FV+
Sbjct: 73 RLFEKYGSVFSCNILRDKSTQASKGCCFVT 102
Score = 31.5 bits (68), Expect = 0.73
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
FA FG I +C ++RD Q KS+G AFV+
Sbjct: 162 FAKFGHIEDCSVLRD-QDGKSRGCAFVT 188
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 31.9 bits (69), Expect = 0.55
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F +G + +C I+RD T SKG FV+
Sbjct: 73 RLFEKYGSVFSCNILRDKSTQASKGCCFVT 102
Score = 31.5 bits (68), Expect = 0.73
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
FA FG I +C ++RD Q KS+G AFV+
Sbjct: 162 FAKFGHIEDCSVLRD-QDGKSRGCAFVT 188
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 31.9 bits (69), Expect = 0.55
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F +G + +C I+RD T SKG FV+
Sbjct: 73 RLFEKYGSVFSCNILRDKSTQASKGCCFVT 102
Score = 31.5 bits (68), Expect = 0.73
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
FA FG I +C ++RD Q KS+G AFV+
Sbjct: 162 FAKFGHIEDCSVLRD-QDGKSRGCAFVT 188
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 31.9 bits (69), Expect = 0.55
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F +G + +C I+RD T SKG FV+
Sbjct: 73 RLFEKYGSVFSCNILRDKSTQASKGCCFVT 102
Score = 31.5 bits (68), Expect = 0.73
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
FA FG I +C ++RD Q KS+G AFV+
Sbjct: 162 FAKFGHIEDCSVLRD-QDGKSRGCAFVT 188
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 31.9 bits (69), Expect = 0.55
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F +G + +C I+RD T SKG FV+
Sbjct: 73 RLFEKYGSVFSCNILRDKSTQASKGCCFVT 102
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 31.9 bits (69), Expect = 0.55
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F +G + +C I+RD T SKG FV+
Sbjct: 73 RLFEKYGSVFSCNILRDKSTQASKGCCFVT 102
Score = 31.5 bits (68), Expect = 0.73
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
FA FG I +C ++RD Q KS+G AFV+
Sbjct: 162 FAKFGHIEDCSVLRD-QDGKSRGCAFVT 188
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 31.5 bits (68), Expect = 0.73
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL 598
F FG+I ++ D T KS+GY FV++
Sbjct: 55 FEQFGDIEEAVVITDRNTQKSRGYGFVTM 83
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
FA G ++N RIV D +T + +G+AFV
Sbjct: 26 FAAVGHVNNVRIVYDRETGRPRGFAFV 52
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F+ G+I+N RIV D +T + +G+AF+
Sbjct: 25 FSSIGQINNVRIVCDRETGRPRGFAFI 51
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 515 APFGEISNCRIVRDPQTLKSKGYAFVS 595
A G + RIVRD T K KG+AFV+
Sbjct: 268 AQIGPVEAVRIVRDKDTGKGKGFAFVN 294
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F+ G +SN RIV D +T + +G+AFV
Sbjct: 24 FSQAGNVSNVRIVCDRETGRPRGFAFV 50
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 491 NKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
NK F+ FG I +C++ D + SKGY FV
Sbjct: 158 NKSVYDTFSLFGNILSCKVATDDEG-NSKGYGFV 190
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 261 GDVKGCKIIREP-GNDP-YAFLEFTCHTAAATALAVMNKRVVLDKEMKV 401
G++ CK+ + GN Y F+ F +A TA+ +N ++ DK++ V
Sbjct: 169 GNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 309 YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEI 488
YA++ F A AL MN V+ + M++ W+ P + + +IF+ +L I
Sbjct: 100 YAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQ---RDPAARRAGNGNIFIKNLDRVI 156
Query: 489 E 491
+
Sbjct: 157 D 157
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 491 NKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
NK F+ FG I +C++ D + SKGY FV
Sbjct: 158 NKSVYDTFSLFGNILSCKVATDDEG-NSKGYGFV 190
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 261 GDVKGCKIIREP-GNDP-YAFLEFTCHTAAATALAVMNKRVVLDKEMKV 401
G++ CK+ + GN Y F+ F +A TA+ +N ++ DK++ V
Sbjct: 169 GNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 309 YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEI 488
YA++ F A AL MN V+ + M++ W+ P + + +IF+ +L I
Sbjct: 100 YAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQ---RDPAARRAGNGNIFIKNLDRVI 156
Query: 489 E 491
+
Sbjct: 157 D 157
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F+ +G + + ++RDP T S+G+ FV+
Sbjct: 69 FSQWGPVVDAIVIRDPNTKHSRGFGFVT 96
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F+ +G + + ++RDP T S+G+ FV+
Sbjct: 89 FSQWGPVVDAIVIRDPNTKHSRGFGFVT 116
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F+ +G + + ++RDP T S+G+ FV+
Sbjct: 90 FSQWGPVVDAIVIRDPNTKHSRGFGFVT 117
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F FGEI+ C +V D + S+G+ F+
Sbjct: 96 FGEFGEINKCDLVYDRPSGNSRGFGFI 122
>Z81486-13|CAE47465.1| 611|Caenorhabditis elegans Hypothetical
protein Y40H4A.1b protein.
Length = 611
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 314 CIRVISWLPYNLATFYIAYLPNNV 243
C + +W PYNL + A+ PN V
Sbjct: 531 CAFIATWTPYNLIVCWEAFFPNTV 554
>Z81486-12|CAC42272.1| 585|Caenorhabditis elegans Hypothetical
protein Y40H4A.1a protein.
Length = 585
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 314 CIRVISWLPYNLATFYIAYLPNNV 243
C + +W PYNL + A+ PN V
Sbjct: 505 CAFIATWTPYNLIVCWEAFFPNTV 528
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
FAPFG I + ++ D T +SK + FVS
Sbjct: 449 FAPFGHIVSAKVFVDRATNQSKCFGFVS 476
>Z78198-6|CAB01572.2| 848|Caenorhabditis elegans Hypothetical
protein F55C5.7 protein.
Length = 848
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -1
Query: 671 VWN-LESPANWPIHAWMAASASAFFTMIQKHNPWI*AFE-DRVLCDS 537
VWN L+ P + +H W A S FF + +H+ +I F D +L DS
Sbjct: 626 VWNYLDLPESLIVH-WSAQIVSFFFVLHAEHHEFIGDFNADDILIDS 671
>U55370-7|AAA97998.2| 388|Caenorhabditis elegans Hypothetical
protein K03B4.1 protein.
Length = 388
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 175 DESH-PKTLYVGNLDPSVTEVFLCTLFGK 258
D SH P T VGN P++T FL T FG+
Sbjct: 193 DSSHFPLTYLVGNSLPAITSPFLKTSFGE 221
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
R F +G+I + I RD + +SKG+ FV
Sbjct: 37 RTFERYGDIGDVHIPRDKYSRQSKGFGFV 65
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
R F +G+I + I RD + +SKG+ FV
Sbjct: 37 RTFERYGDIGDVHIPRDKYSRQSKGFGFV 65
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
FAPFG I + ++ D T +SK + FVS
Sbjct: 449 FAPFGHIVSAKVFVDRATNQSKCFGFVS 476
>AY221631-1|AAP97492.1| 611|Caenorhabditis elegans muscarinic
acetylcholine receptorlarge isoform protein.
Length = 611
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 314 CIRVISWLPYNLATFYIAYLPNNV 243
C + +W PYNL + A+ PN V
Sbjct: 531 CAFIATWTPYNLIVCWEAFFPNTV 554
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQ 610
F G+I + R++ DP + S+GYAFV+ K+
Sbjct: 220 FEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKE 252
>AL034391-3|CAE47471.1| 611|Caenorhabditis elegans Hypothetical
protein Y40H4A.1b protein.
Length = 611
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 314 CIRVISWLPYNLATFYIAYLPNNV 243
C + +W PYNL + A+ PN V
Sbjct: 531 CAFIATWTPYNLIVCWEAFFPNTV 554
>AL034391-2|CAA22301.2| 585|Caenorhabditis elegans Hypothetical
protein Y40H4A.1a protein.
Length = 585
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 314 CIRVISWLPYNLATFYIAYLPNNV 243
C + +W PYNL + A+ PN V
Sbjct: 505 CAFIATWTPYNLIVCWEAFFPNTV 528
>AF139093-1|AAD48771.1| 585|Caenorhabditis elegans muscarinic
acetylcholine receptor protein.
Length = 585
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 314 CIRVISWLPYNLATFYIAYLPNNV 243
C + +W PYNL + A+ PN V
Sbjct: 505 CAFIATWTPYNLIVCWEAFFPNTV 528
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
RAF PFG I + + DP T K +AFV
Sbjct: 120 RAFDPFGPIKSINMSWDPATGHHKTFAFV 148
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
RAF PFG I + + DP T K +AFV
Sbjct: 120 RAFDPFGPIKSINMSWDPATGHHKTFAFV 148
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
RAF PFG I + + DP T K +AFV
Sbjct: 120 RAFDPFGPIKSINMSWDPATGHHKTFAFV 148
>Z78539-8|CAE17715.1| 223|Caenorhabditis elegans Hypothetical
protein F48F7.8 protein.
Length = 223
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -2
Query: 670 YGILNPQPTGPFMPGWQLRHLLSLQ*YKSITLGFERLRIAYYATVRYLTKWSEGSRSMFV 491
+GI+ P G + PG + + L+ + IT F L+I ++ TKWSEG R
Sbjct: 7 FGIVFDSPRG-YAPGQTVTGQVVLRSNEPITARF--LKICFHGAAH--TKWSEGERRYRT 61
Query: 490 SISG 479
+ G
Sbjct: 62 NCEG 65
>Z69661-7|CAE17832.1| 223|Caenorhabditis elegans Hypothetical
protein F48F7.8 protein.
Length = 223
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -2
Query: 670 YGILNPQPTGPFMPGWQLRHLLSLQ*YKSITLGFERLRIAYYATVRYLTKWSEGSRSMFV 491
+GI+ P G + PG + + L+ + IT F L+I ++ TKWSEG R
Sbjct: 7 FGIVFDSPRG-YAPGQTVTGQVVLRSNEPITARF--LKICFHGAAH--TKWSEGERRYRT 61
Query: 490 SISG 479
+ G
Sbjct: 62 NCEG 65
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 462 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACS*RPALWPPPC 334
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 1446 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 1488
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 462 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACS*RPALWPPPC 334
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 2030 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 2072
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 462 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACS*RPALWPPPC 334
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 1446 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 1488
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 462 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACS*RPALWPPPC 334
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 2030 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 2072
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 491 NKHT-PRAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
NK T + FA FG I++C ++ KSKG+ FV+
Sbjct: 225 NKETLEKVFAKFGNITSCEVMTVEG--KSKGFGFVA 258
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.3 bits (60), Expect = 6.8
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 462 ICDD---DY*CPSSAGYQDSSPN*PSFPCRGPLACS*RPALWPPPC 334
IC D Y C SA + D SP+ S P R C RP PP C
Sbjct: 2030 ICQDLPQGYTCQCSADFVDVSPHRASHPGR---LCQPRPTPPPPEC 2072
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 326 YVSHGGGHSAGRHEQASGPRQGNEG 400
Y S G +S ++QA G RQGN G
Sbjct: 266 YQSFAGNNSGFDYQQAQGARQGNNG 290
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 491 NKHT-PRAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
NK T + FA FG I++C ++ KSKG+ FV+
Sbjct: 165 NKETLEKLFAKFGNITSCEVMTVEG--KSKGFGFVA 198
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 491 NKHT-PRAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
NK T + FA FG I++C ++ KSKG+ FV+
Sbjct: 162 NKETLEKLFAKFGNITSCEVMTVEG--KSKGFGFVA 195
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 491 NKHT-PRAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
NK T + FA FG I++C ++ KSKG+ FV+
Sbjct: 225 NKETLEKLFAKFGNITSCEVMTVEG--KSKGFGFVA 258
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 261 GDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPG 422
G+ K+I GN A++ +A ++ M + V K +KV WA SPG
Sbjct: 549 GEASRVKVI---GNRACAYITMENRRSANDVVSKMREVSVAKKMVKVYWARSPG 599
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,189,863
Number of Sequences: 27780
Number of extensions: 427073
Number of successful extensions: 1106
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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