Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30614
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   3.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.7  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 448 LLVSVFGWLPGLVAQLTFISL 386
           L V+V  W  G+ A LT+ISL
Sbjct: 79  LFVTVPRWRNGIPATLTYISL 99


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/37 (21%), Positives = 18/37 (48%)
 Frame = -2

Query: 727 RLSIHTLSLVVLRVDQVRTYGILNPQPTGPFMPGWQL 617
           ++  +T S+  + +       +L P P  P+  GW++
Sbjct: 180 KIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKV 216


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 646 LAGDSRFHTYELGQRVKPPAKGCELKGAPQLV 741
           +A D+ +    L    KP A+GC + G+ Q V
Sbjct: 323 VAKDAAYDNIVLKLLTKPRARGCIIFGSDQEV 354


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 576 RVMLLYHCKESRCRSCHPGMN 638
           R MLL H K    R  HP +N
Sbjct: 148 REMLLEHKKRRARRDIHPELN 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,488
Number of Sequences: 438
Number of extensions: 5221
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)