Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30614
(803 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 65 4e-11
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 65 4e-11
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 63 2e-10
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 60 2e-09
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 53 2e-07
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 49 3e-06
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 49 3e-06
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 49 3e-06
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 49 4e-06
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 46 2e-05
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 46 2e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 45 5e-05
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 43 2e-04
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 42 6e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 39 0.004
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 37 0.014
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 36 0.042
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 35 0.073
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 35 0.073
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 35 0.073
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 34 0.13
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 34 0.13
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 33 0.17
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 33 0.17
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 33 0.17
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 33 0.17
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 33 0.17
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 33 0.17
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 33 0.17
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 33 0.17
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 33 0.17
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.22
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 33 0.22
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 33 0.22
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 33 0.22
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 33 0.22
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 33 0.29
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 33 0.29
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 33 0.29
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 33 0.29
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 32 0.39
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 32 0.39
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 32 0.39
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 32 0.51
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 32 0.51
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 32 0.51
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 32 0.51
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 32 0.51
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 32 0.51
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 32 0.51
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 31 0.68
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 31 0.68
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 31 0.68
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 31 0.68
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 31 0.68
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 31 0.68
At5g51300.2 68418.m06360 splicing factor-related contains simila... 31 0.90
At5g51300.1 68418.m06359 splicing factor-related contains simila... 31 0.90
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 31 1.2
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 31 1.2
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 31 1.2
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 31 1.2
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 31 1.2
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 31 1.2
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 31 1.2
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 31 1.2
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 30 1.6
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 30 1.6
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 30 1.6
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 30 2.1
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 30 2.1
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 30 2.1
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 30 2.1
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 29 2.7
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 29 2.7
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 2.7
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 2.7
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 29 2.7
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 29 2.7
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 29 2.7
At5g54680.1 68418.m06809 basic helix-loop-helix (bHLH) family pr... 29 3.6
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 29 3.6
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 29 3.6
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 29 3.6
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 29 3.6
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 3.6
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 29 3.6
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 29 3.6
At5g10310.1 68418.m01196 expressed protein 29 4.8
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 4.8
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 29 4.8
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 29 4.8
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 29 4.8
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 29 4.8
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 29 4.8
At5g24350.1 68418.m02870 expressed protein weak similarity to ne... 28 6.3
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 28 6.3
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 28 6.3
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 28 8.3
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 28 8.3
At1g42367.1 68414.m04881 hypothetical protein 28 8.3
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 28 8.3
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 28 8.3
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/76 (40%), Positives = 48/76 (63%)
Frame = +3
Query: 261 GDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQPKTD 440
G ++ CK+IR+ + Y F+ + A+ A+ +N R + + MKVNWA + G + D
Sbjct: 87 GPIESCKLIRKDKSS-YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQ--RED 143
Query: 441 TSNHHHIFVGDLSPEI 488
TS+H +IFVGDLSPE+
Sbjct: 144 TSSHFNIFVGDLSPEV 159
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = +1
Query: 178 ESHPK--TLYVGNLDPSVTEVFLCTLF 252
E++P+ T+YVGNL P VT++ L LF
Sbjct: 267 ENNPQFTTVYVGNLSPEVTQLDLHRLF 293
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/76 (40%), Positives = 48/76 (63%)
Frame = +3
Query: 261 GDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQPKTD 440
G ++ CK+IR+ + Y F+ + A+ A+ +N R + + MKVNWA + G + D
Sbjct: 87 GPIESCKLIRKDKSS-YGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQ--RED 143
Query: 441 TSNHHHIFVGDLSPEI 488
TS+H +IFVGDLSPE+
Sbjct: 144 TSSHFNIFVGDLSPEV 159
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQMPKLPSRHEWASWLGIQDSIRTN 679
+F+ F S+ R++ D +T +S+G+ FVS +Q + W+ + IR N
Sbjct: 167 SFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSR-QIRCN 222
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = +1
Query: 178 ESHPK--TLYVGNLDPSVTEVFLCTLF 252
E++P+ T+YVGNL P VT++ L LF
Sbjct: 263 ENNPQFTTVYVGNLSPEVTQLDLHRLF 289
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/81 (39%), Positives = 50/81 (61%)
Frame = +3
Query: 261 GDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQPKTD 440
G V+ CK+IR+ + Y F+ + +A A+ +N R + + +KVNWA + G + D
Sbjct: 78 GPVESCKLIRKEKSS-YGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQ--RED 134
Query: 441 TSNHHHIFVGDLSPEIETNIL 503
TS+H +IFVGDLSPE+ +L
Sbjct: 135 TSSHFNIFVGDLSPEVTDAML 155
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQMPKLPSRHEWASWLGIQDSIRTN 679
F+ + S+ R++ D +T +S+G+ FVS +Q + WLG + IR N
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSR-QIRCN 213
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 60.1 bits (139), Expect = 2e-09
Identities = 31/76 (40%), Positives = 48/76 (63%)
Frame = +3
Query: 261 GDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQPKTD 440
G V+ K+IR+ + Y F+ + +AA A+ +N R + + +KVNWA + G + D
Sbjct: 83 GPVESSKLIRKDKSS-YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQ--RED 139
Query: 441 TSNHHHIFVGDLSPEI 488
TS+H +IFVGDLSPE+
Sbjct: 140 TSSHFNIFVGDLSPEV 155
Score = 31.1 bits (67), Expect = 0.90
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQMPKLPSRHEWASWLGIQDSIRTN 679
++F+ F S+ R++ D +T +S+G+ FVS +Q + WL + IR N
Sbjct: 162 QSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSR-QIRCN 218
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Frame = +3
Query: 255 QIGDVKGCKIIREP--GN-DPYAFLEFTCHTAAATALAVMNKRVVLDKEM--KVNWATSP 419
Q G++ K+IR G + Y F+EF H AA L N + E+ ++NWA S
Sbjct: 46 QTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWA-SF 104
Query: 420 GNQPKTDTSNHHHIFVGDLSPEIETNILRE 509
G+ K D H IFVGDL+P++ +L+E
Sbjct: 105 GSGQKVDAGPDHSIFVGDLAPDVTDYLLQE 134
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/56 (26%), Positives = 31/56 (55%)
Frame = +3
Query: 255 QIGDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPG 422
Q+G+V KI P Y +++F +A A+ M +V+ + ++++W+ +PG
Sbjct: 259 QLGEVIYVKI---PATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPG 311
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 521 FGEISNCRIVRDPQTLKSKGYAFV 592
+ + ++V DP T +SKGY FV
Sbjct: 140 YSSVRGAKVVTDPSTGRSKGYGFV 163
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 49.2 bits (112), Expect = 3e-06
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Frame = +3
Query: 231 SFPMYVVWQIGDVKGCKIIREP---GNDPYAFLEFTCHTAAATALAVMNKRVVLDKEM-- 395
++ M V Q G+ K+IR ++ Y F+EF H+ A L N + E
Sbjct: 74 NYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTF 133
Query: 396 KVNWATSPGNQPKTDTSNHHH-IFVGDLSPEIETNILRE 509
++NWA + + + T H IFVGDL+PE+ +L +
Sbjct: 134 RLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSD 172
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 163 ANMGD-ESHPKTLYVGNLDPSVTEVFLCTLFGK 258
AN GD + + T++VG LD +VT+ L ++FG+
Sbjct: 250 ANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQ 282
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +3
Query: 264 DVKGCKIIREPGN---DPYAFLEFTCHTAAATALAVMNKRVV--LDKEMKVNWAT-SPGN 425
++ K+IR N + Y F+EF H A L N + D+ ++NWA+ S G
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 426 QPKTDTSNHHHIFVGDLSPEIETNILRE 509
+ + IFVGDLSP++ N+L E
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHE 215
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +3
Query: 264 DVKGCKIIREPGN---DPYAFLEFTCHTAAATALAVMNKRVV--LDKEMKVNWAT-SPGN 425
++ K+IR N + Y F+EF H A L N + D+ ++NWA+ S G
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGE 187
Query: 426 QPKTDTSNHHHIFVGDLSPEIETNILRE 509
+ + IFVGDLSP++ N+L E
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHE 215
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 255 QIGDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGN-QP 431
+ G++ KI P F++F A AL +N V+ + ++++W +P N QP
Sbjct: 326 EFGEIVSVKI---PVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQP 382
Query: 432 KTDTSN 449
+ N
Sbjct: 383 RDKYGN 388
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 48.8 bits (111), Expect = 4e-06
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Frame = +3
Query: 216 PECHRSFPMYVVWQIGDVKGCKIIREPGN---DPYAFLEFTCHTAAATALAVMNKRVVLD 386
P ++ M V G+ K+IR N + Y F+EF H A L N +
Sbjct: 89 PWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPS 148
Query: 387 KEM--KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILRE 509
E ++NWA + + H +FVGDL+P++ ++L E
Sbjct: 149 SEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTE 191
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +3
Query: 246 VVWQIGDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGN 425
V Q G++ KI P F+++ A AL+V+N + + ++++W SP N
Sbjct: 297 VFGQFGELVHVKI---PAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSN 353
Query: 426 Q 428
+
Sbjct: 354 K 354
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 46.4 bits (105), Expect = 2e-05
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Frame = +3
Query: 261 GDVKGCKIIR--EPGN-DPYAFLEFTCHTAAATALAVMNKRVVL---DKEMKVNWATSPG 422
G++ K+IR + G + Y F+EF H AA L N + D+ ++NWA S
Sbjct: 86 GEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWA-SLS 144
Query: 423 NQPKTDTSNHHHIFVGDLSPEIETNILRE 509
+ K D S + IFVGDL+ ++ IL E
Sbjct: 145 SGDKRDDSPDYTIFVGDLAADVTDYILLE 173
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/93 (21%), Positives = 42/93 (45%)
Frame = +3
Query: 255 QIGDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQPK 434
Q G++ KI P F++F+ + A AL ++N + ++++W SP N+
Sbjct: 283 QYGEIVHVKI---PAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQS 339
Query: 435 TDTSNHHHIFVGDLSPEIETNILREPSLHLVRY 533
D S ++ G + + ++P+ + Y
Sbjct: 340 GDPSQFYYGGYGQGQEQYGYTMPQDPNAYYGGY 372
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 46.4 bits (105), Expect = 2e-05
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Frame = +3
Query: 261 GDVKGCKIIR--EPGN-DPYAFLEFTCHTAAATALAVMNKRVVL---DKEMKVNWATSPG 422
G++ K+IR + G + Y F+EF H AA L N + D+ ++NWA S
Sbjct: 86 GEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWA-SLS 144
Query: 423 NQPKTDTSNHHHIFVGDLSPEIETNILRE 509
+ K D S + IFVGDL+ ++ IL E
Sbjct: 145 SGDKRDDSPDYTIFVGDLAADVTDYILLE 173
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Frame = +3
Query: 261 GDVKGCKIIREP---GNDPYAFLEFTCHTAAATALAVMNKRVV--LDKEMKVNWAT-SPG 422
G+V K+IR ++ Y F+EF AA L + V+ D+ ++NWA+ S G
Sbjct: 132 GEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTG 191
Query: 423 NQPKTDTSNHHHIFVGDLSPEIETNILRE 509
+ + +FVGDLSP++ +L E
Sbjct: 192 EKRAVENGPDLSVFVGDLSPDVTDVLLHE 220
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F+ GE+S+ +++R+ T +S+GY FV
Sbjct: 128 FSHTGEVSSVKVIRNKLTSQSEGYGFV 154
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Frame = +3
Query: 264 DVKGCKIIREPGN---DPYAFLEFTCHTAAATALAVMNKRVV--LDKEMKVNWAT-SPGN 425
++ K+IR N + Y F+EF H A L N + D+ ++NWA+ S G
Sbjct: 130 EIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGE 189
Query: 426 QPKTDTSNHHHIFVGDLSPEIETNILRE 509
+ + IFVGDL+P++ +L E
Sbjct: 190 KRLENNGPDLSIFVGDLAPDVSDALLHE 217
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 255 QIGDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGN-QP 431
+ G++ KI P F++F A AL +N V+ + ++++W +P N QP
Sbjct: 328 EFGEIVSVKI---PVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQP 384
Query: 432 KTDTSN 449
+ N
Sbjct: 385 RDKYGN 390
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 41.5 bits (93), Expect = 6e-04
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = +3
Query: 264 DVKGCKIIREPG---NDPYAFLEFTCHTAAATALAVMNKRVVLDKEM--KVNWAT-SPGN 425
+V K+IR ++ Y F+EF +AA AL + + + E ++NWA+ S G
Sbjct: 144 EVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGE 203
Query: 426 QPKTDTSNHHHIFVGDLSPEIETNILRE 509
+ ++ IFVGDL+P++ +L E
Sbjct: 204 KRASENGPDLSIFVGDLAPDVSDAVLLE 231
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F+ E+S+ +++R+ QT +S+GY FV
Sbjct: 139 FSHTNEVSSVKVIRNKQTCQSEGYGFV 165
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 QIGDVKGCKIIR-EPGNDP-YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQ 428
+ G++ CK+ E G Y F++F AA A+ +N +V DKE+ V ++
Sbjct: 134 KFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR 193
Query: 429 PKTDTSNHHHIFVGDLSPEIETNILRE 509
K + + ++++ +L ++ ++LRE
Sbjct: 194 VKPE-EKYTNLYMKNLDADVSEDLLRE 219
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 37.1 bits (82), Expect = 0.014
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F+PFG+I R++RD +T + KG+ F++
Sbjct: 27 FSPFGQIKEARLIRDSETQRPKGFGFIT 54
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 35.5 bits (78), Expect = 0.042
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
R F+ FGEI+ ++++D +SKGYAF+
Sbjct: 58 REFSAFGEIAEVKLIKDEAMKRSKGYAFI 86
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 34.7 bits (76), Expect = 0.073
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
+ F GE++ RI+++PQT KSKG AF+
Sbjct: 232 KVFGHVGEVTEVRILKNPQTKKSKGSAFL 260
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 34.7 bits (76), Expect = 0.073
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFV 592
AF +GEI C +V D T + KGY FV
Sbjct: 427 AFESYGEIEECSVVMDKDTGRGKGYGFV 454
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 34.7 bits (76), Expect = 0.073
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
FAPFG I++C+++RDP + S+G FV+
Sbjct: 347 FAPFGTITSCKVMRDPSGV-SRGSGFVA 373
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 491 NKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
+K F+ FG I +C++ DP +SKGY FV
Sbjct: 146 HKALHETFSAFGPILSCKVAVDPSG-QSKGYGFV 178
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 GDVKGCKIIREPGNDP--YAFLEFTCHTAAATALAVMNKRVVLDKEMKVN-WATSPGNQP 431
G + CK+ +P Y F+++ AA A+ +N ++ DK++ V + P
Sbjct: 157 GPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDP 216
Query: 432 KTDTSNHHHIFVGDLSPEIETNILRE 509
+ +++V +LS + L +
Sbjct: 217 SGEKVKFTNVYVKNLSESLSDEELNK 242
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
+AFA F + +++RD +T K+KGY FVS
Sbjct: 155 KAFARFPTFNMAKVIRDKRTGKTKGYGFVS 184
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 169 MGDESHPKT-LYVGNLDPSVTEVFLCTLF 252
+ D++HP + LY G+LDP VTE L LF
Sbjct: 41 VADQTHPNSSLYAGDLDPKVTEAHLFDLF 69
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F PFG ++ C + D +T S+G+ FVS
Sbjct: 194 FRPFGAVTRCHVAIDQKTSMSRGFGFVS 221
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFV 592
AF +GEI +C+ V D + KSKGY F+
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFI 186
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFV 592
AF +GEI +C+ V D + KSKGY F+
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFI 186
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFV 592
AF +GEI +C+ V D + KSKGY F+
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFI 186
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
+AF FGE++ ++ D +T +S+G+ FVS
Sbjct: 53 QAFTSFGEVTEATVIADRETGRSRGFGFVS 82
Score = 31.5 bits (68), Expect = 0.68
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 261 GDVKGCKII--REPGNDP-YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQP 431
G+V +I RE G + F+ F+C +A A+ M+ + + ++++VN AT + P
Sbjct: 59 GEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAP 118
Query: 432 KT 437
++
Sbjct: 119 RS 120
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
+AF FGE++ ++ D +T +S+G+ FVS
Sbjct: 53 QAFTSFGEVTEATVIADRETGRSRGFGFVS 82
Score = 31.5 bits (68), Expect = 0.68
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 261 GDVKGCKII--REPGNDP-YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQP 431
G+V +I RE G + F+ F+C +A A+ M+ + + ++++VN AT + P
Sbjct: 59 GEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAP 118
Query: 432 KT 437
++
Sbjct: 119 RS 120
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFV 592
AF +GEI+ C +V D T ++KG+ FV
Sbjct: 182 AFEVYGEITECSVVMDKDTGRAKGFGFV 209
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F FGEI I+ D T KSKGY FV+
Sbjct: 35 RYFEQFGEILEAVIITDKNTGKSKGYGFVT 64
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F FGEI I+ D T KSKGY FV+
Sbjct: 35 RYFEQFGEILEAVIITDKNTGKSKGYGFVT 64
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
RAF+ FG+I +C+I+ + T +S+G+ F++
Sbjct: 25 RAFSRFGDILDCQIMLERDTGRSRGFGFIT 54
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/29 (41%), Positives = 23/29 (79%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL 598
FA G++++C +V +P+T S+G+AFV++
Sbjct: 92 FAKEGKVASCFLVMEPRTRVSRGFAFVTM 120
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/29 (41%), Positives = 23/29 (79%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL 598
FA G++++C +V +P+T S+G+AFV++
Sbjct: 91 FAKEGKVASCFLVMEPRTRVSRGFAFVTM 119
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 491 NKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
N+ AFA FG++ + R++ D + +SKG+ FV+
Sbjct: 47 NEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVT 81
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 33.1 bits (72), Expect = 0.22
Identities = 24/92 (26%), Positives = 46/92 (50%)
Frame = +3
Query: 309 YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEI 488
Y F+E+ A A+ V+N + K ++VN A +Q K ++F+G+L P++
Sbjct: 68 YGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKA----SQDKKSLDVGANLFIGNLDPDV 123
Query: 489 ETNILREPSLHLVRYRTVA*YAILKRSNPRVM 584
+ +L Y T + + ++ SNP++M
Sbjct: 124 DEKLL---------YDTFSAFGVI-ASNPKIM 145
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 512 FAPFGEI-SNCRIVRDPQTLKSKGYAFVS 595
F+ FG I SN +I+RDP T S+G+ F+S
Sbjct: 132 FSAFGVIASNPKIMRDPDTGNSRGFGFIS 160
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +1
Query: 175 DESHPKT--LYVGNLDPSVTEVFLCTLFGK 258
D+ P+T LYVGNL P V E FL FG+
Sbjct: 172 DDGDPQTTNLYVGNLSPKVDENFLLRTFGR 201
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F+ +GEI + ++RD T KSKG+AF++
Sbjct: 56 FSQYGEIVDVNLIRDKGTGKSKGFAFLA 83
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/29 (41%), Positives = 23/29 (79%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
AF+ +GE+ + +I+ D +T +S+G+AFV+
Sbjct: 53 AFSKYGEVVDAKIIVDRETGRSRGFAFVT 81
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F FGEI I+ D T KSKGY FV+
Sbjct: 35 RYFDQFGEILEAVIITDKATGKSKGYGFVT 64
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 32.3 bits (70), Expect = 0.39
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 309 YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWA-TSPGNQPKTDTS 446
YAFLE+T AA TAL MN +++ + V+ A T P Q ++ S
Sbjct: 325 YAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTKPFRQNRSQPS 371
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFV 592
AF FGE+ +I+ D + +SKGYAF+
Sbjct: 301 AFEGFGELVEVKIIMDKISKRSKGYAFL 328
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFV 592
AF +GEI +C+ V D + +SKGY F+
Sbjct: 147 AFKQYGEIEDCKCVVDKVSGQSKGYGFI 174
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 178 ESHPKT-LYVGNLDPSVTEVFLCTLFGK 258
++HP + LYVG+LDPSV E L LF +
Sbjct: 40 QTHPNSSLYVGDLDPSVNESHLLDLFNQ 67
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F FGEI ++ D T +SKGY FV+
Sbjct: 40 RYFEQFGEIVEAVVITDKNTGRSKGYGFVT 69
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
FA FG I++C+++RDP SKG FV+
Sbjct: 348 FAEFGTITSCKVMRDPSG-TSKGSGFVA 374
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +3
Query: 261 GDVKGCKIIREPGNDP--YAFLEFTCHTAAATALAVMNKRVVLDKEMKVN-WATSPGNQP 431
G + CK+ + Y F++F +A A+ +N +V+ DK++ V + +
Sbjct: 158 GTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERES 217
Query: 432 KTDTSNHHHIFVGDLS 479
D +++V +LS
Sbjct: 218 AADKMKFTNVYVKNLS 233
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 31.9 bits (69), Expect = 0.51
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
AFA +G++ + +I+ D +T +S+G+ FV+
Sbjct: 27 AFAQYGDVIDSKIINDRETGRSRGFGFVT 55
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 31.9 bits (69), Expect = 0.51
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
AFA +G++ + +I+ D +T +S+G+ FV+
Sbjct: 27 AFAQYGDVIDSKIINDRETGRSRGFGFVT 55
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F FGE+ + +I+ D +T +SKG+ FV+
Sbjct: 62 RCFNEFGEVFDSKIIIDRETGRSKGFRFVT 91
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 31.9 bits (69), Expect = 0.51
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 249 VWQI-GDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGN 425
++Q+ G+VK ++ P F+EF AA AL VMN +V+ K M + ++ G
Sbjct: 202 IFQVYGEVK--QVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQFSRPGGL 259
Query: 426 QPKTDTSNHHH 458
K ++H H
Sbjct: 260 TKKLFFASHFH 270
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 491 NKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
NK F+ FG++ +C++ RD + SKGY FV
Sbjct: 44 NKQLCDMFSAFGKVLSCKVARDASGV-SKGYGFV 76
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
AF +GE+ + R++ D +T +S+G+ FV+
Sbjct: 59 AFTKYGEVVDTRVILDRETGRSRGFGFVT 87
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFV 592
AFA FGE+++ ++V D + SKG+ FV
Sbjct: 75 AFAQFGEVADAKVVTDRVSGYSKGFGFV 102
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
AFA FG++ + +++ D +T +S+G+ FV+
Sbjct: 54 AFAHFGDVVDAKVIVDRETGRSRGFGFVN 82
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
AFA FG++ + +++ D +T +S+G+ FV+
Sbjct: 54 AFAHFGDVVDAKVIVDRETGRSRGFGFVN 82
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F +GEI C +V D T K+KG+ FV
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFV 150
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F +GEI C +V D T K+KG+ FV
Sbjct: 124 FEGYGEIEECTVVIDKATGKAKGFGFV 150
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQM 613
F+ FGEI ++++D T SKGY FV QM
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQM 533
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQM 613
F+ FGEI ++++D T SKGY FV QM
Sbjct: 500 FSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQM 533
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
+ F+ FG+++N +I+ + +T +S GY +V
Sbjct: 76 KVFSEFGQVTNVKIIANERTRQSLGYGYV 104
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
+ F+ FG+++N +I+ + +T +S GY +V
Sbjct: 95 KVFSEFGQVTNVKIIANERTRQSLGYGYV 123
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/30 (33%), Positives = 22/30 (73%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F+ FG++ + +I+ D ++ +S+G+ FV+
Sbjct: 24 RTFSQFGDVIDSKIINDRESGRSRGFGFVT 53
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/30 (33%), Positives = 22/30 (73%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F+ FG++ + +I+ D ++ +S+G+ FV+
Sbjct: 24 RTFSQFGDVIDSKIINDRESGRSRGFGFVT 53
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/30 (33%), Positives = 22/30 (73%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F+ FG++ + +I+ D ++ +S+G+ FV+
Sbjct: 24 RTFSQFGDVIDSKIINDRESGRSRGFGFVT 53
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/30 (33%), Positives = 22/30 (73%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F+ FG++ + +I+ D ++ +S+G+ FV+
Sbjct: 24 RTFSQFGDVIDSKIINDRESGRSRGFGFVT 53
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL 598
FA G++++ +V DP T +S+G+ F+S+
Sbjct: 65 FAKEGKVTDVHLVLDPWTRESRGFGFISM 93
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL 598
FA G++++ +V DP T +S+G+ F+S+
Sbjct: 95 FAKEGKVTDVHLVLDPWTRESRGFGFISM 123
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVSL 598
R F+ G++ + R+V D +T +S+G+ FV +
Sbjct: 225 RLFSEHGKVVDARVVSDRETGRSRGFGFVQM 255
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQ 610
R F PFG I +C++V + +SKG+ FV +Q
Sbjct: 130 RMFCPFGSILSCKVVE--ENGQSKGFGFVQFDTEQ 162
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSL 598
F PFG + + + R+PQT +S+G +V++
Sbjct: 128 FQPFGTVISVEVSRNPQTGESRGSGYVTM 156
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F FGEI + +V D +T +S+GY FV+
Sbjct: 33 FKRFGEIIHVNVVCDRETDRSQGYGFVT 60
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F FGE+ +I+RD T +S+G+ FV+
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVT 177
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
R F +G I +V D T K KGYAF+
Sbjct: 156 REFESYGPIKRVHLVTDQLTNKPKGYAFI 184
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFV 592
AF+ FGE++ RI D + +S+G+ FV
Sbjct: 60 AFSSFGEVAEVRIAYDKGSGRSRGFGFV 87
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F FGEI ++V D T +SKG+ FV+
Sbjct: 29 FERFGEIVYAKVVCDGATQRSKGFGFVT 56
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F+PFG +++ +++RDP SKG FV+
Sbjct: 152 FSPFGTVTSSKVMRDPNG-TSKGSGFVA 178
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
F+ FG+IS +V D +T +S+G A++
Sbjct: 281 FSTFGKISEVHLVLDKETKRSRGIAYI 307
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
FA +G + +++RD +T +S+G+ FV
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFV 155
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 491 NKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
NKH F +GEI++ I+RD T + +G+ F++
Sbjct: 36 NKH----FGKYGEITDSVIMRDRHTGQPRGFGFIT 66
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFV 592
FA +G + +++RD +T +S+G+ FV
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFV 155
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 491 NKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
NKH F +GEI++ I+RD T + +G+ F++
Sbjct: 36 NKH----FGKYGEITDSVIMRDRHTGQPRGFGFIT 66
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQ 610
R F FGE+ IV DP T + G A++ RK+
Sbjct: 534 RHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKE 568
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F +GEI ++ D T +SKGY FV+
Sbjct: 44 FEQYGEILEAVVIADKNTGRSKGYGFVT 71
>At5g54680.1 68418.m06809 basic helix-loop-helix (bHLH) family
protein similar to unknown protein (pir |B71406)
Length = 234
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +3
Query: 261 GDVKGCKIIREPGNDPYAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWATSPGNQPKTD 440
G + +EPG+ E + T++ + + DK M++ PGN PKTD
Sbjct: 48 GSAGNSEASKEPGSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKTD 107
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 491 NKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFVSL 598
N + F+ G++ R+V D +T +S+G+ FV++
Sbjct: 257 NGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTM 292
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 187 PKTLYVGNLDPSVTEVFLCTLF---GK*AM*KVARLYGSQEMTRMHF 318
P +YVGNL +VT+ L LF GK KV+R+ G+ + T F
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGF 222
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F+ +G++ ++ D T KSKGY FV+
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVT 122
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F+ +G++ ++ D T KSKGY FV+
Sbjct: 95 FSSYGDLEEAIVILDKVTGKSKGYGFVT 122
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 485 NRNKHTPRAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
N + HT F+ FG+++ +++D T +S+G AFV
Sbjct: 70 NSDIHT--LFSTFGKVARVTVLKDRHTRQSRGVAFV 103
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 309 YAFLEFTCHTAAATALAVMNKRVVLDKEMKVNWA 410
+AF++FTC AA A+ N + + + V+WA
Sbjct: 374 FAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWA 407
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 506 RAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
R F +G+I ++ D T +SKGY FV+
Sbjct: 42 RHFDQYGDILEAVVITDKNTGRSKGYGFVT 71
>At5g10310.1 68418.m01196 expressed protein
Length = 122
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 713 HPFAGGFTR*PSSYVWNLESPANWPIHAWMAASASAFF 600
+PF+GGF R PSS L+ +N+ W F+
Sbjct: 83 NPFSGGFVRPPSSLTTVLDQYSNYKPMGWKCHCNGHFY 120
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F +G+I I+ D T +SKGY FV+
Sbjct: 37 FIKYGDILEAVIISDKLTRRSKGYGFVT 64
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 524 GEISNCRIVRDPQTLKSKGYAFVSL*RKQM 613
GE++ RI+R+ + KGYAFV+ K +
Sbjct: 116 GEVTEVRIMREKDSGDGKGYAFVTFRSKDL 145
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 338 GGGHSAGRH-EQASGPRQGNEG*LGDESW 421
GGGHS+GR + G R G G G++ W
Sbjct: 14 GGGHSSGRRGGRGGGGRGGGGGGRGEQRW 42
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F FGEI ++ D + +SKGY FV+
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVT 60
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F FGEI ++ D + +SKGY FV+
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVT 60
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F FGEI ++ D + +SKGY FV+
Sbjct: 33 FEQFGEILEAVVITDKASGRSKGYGFVT 60
>At5g24350.1 68418.m02870 expressed protein weak similarity to
neuroblastoma-amplified protein [Homo sapiens]
GI:4337460
Length = 2376
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 484 KSKQTYSESLRSI-----W*DIELSHSTRSSNAQIQGLCFCIIVKK 606
KS Q++ ESLR++ W D L+ RS N I + C+IV++
Sbjct: 327 KSLQSWKESLRNVVDFTWWSDHALAILKRSGNISIFDISRCVIVQE 372
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 524 GEISNCRIVRDPQTLKSKGYAFVSL*RKQM 613
GEI R+++D + SKGYAFV+ K +
Sbjct: 140 GEIFEVRLMKDRDSGDSKGYAFVAFKTKDV 169
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFV 592
AF G++ R+V D T +S+GY FV
Sbjct: 196 AFRECGDVVGARVVFDGDTGRSRGYGFV 223
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 27.9 bits (59), Expect = 8.3
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = +2
Query: 521 FGEISNCRIVRDPQTLKSKGYAFVS 595
FG++ +C +++D T +S+G+ +V+
Sbjct: 26 FGDLEDCIVMKDRSTGRSRGFGYVT 50
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFVSL*RKQ 610
AF FGEI N + D ++ KGYA + +K+
Sbjct: 114 AFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKE 147
>At1g42367.1 68414.m04881 hypothetical protein
Length = 150
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 423 NQPKTDTSNHHHIFVGDLSPEIETNILREPSL 518
N T +S HH F L PE+E + L +L
Sbjct: 5 NHSTTRSSRRHHHFTSPLDPEVECHHLHHQTL 36
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F FG+I ++ D + +SKGY FV+
Sbjct: 27 FEQFGDIVEAVVITDKSSGRSKGYGFVT 54
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVS 595
F FG+I ++ D + +SKGY FV+
Sbjct: 27 FEQFGDIVEAVVITDKSSGRSKGYGFVT 54
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,225,324
Number of Sequences: 28952
Number of extensions: 400163
Number of successful extensions: 1172
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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