Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30610
         (432 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   0.94 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   3.8  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   5.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    20   8.8  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.4 bits (48), Expect = 0.94
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 146 IYFYRLFFNRNSAIKP 99
           +YF R+ F+ NSA+ P
Sbjct: 335 LYFSRIMFHINSAVNP 350


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 193 RLCYFYYCF 219
           R CY+YY F
Sbjct: 112 RYCYYYYAF 120


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 131 LFFNRNSAIKPFKNTQD*KITF 66
           +FF + SA+ PF+  Q   I F
Sbjct: 55  VFFEKRSALSPFELIQIRTINF 76


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 146 IYFYRLFFNRNSAIKP 99
           +YF R+    NSAI P
Sbjct: 333 LYFCRIMVYLNSAINP 348


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,581
Number of Sequences: 336
Number of extensions: 1679
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)