Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30609
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 175 8e-45
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 100 5e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 99 6e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 89 9e-19
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 61 2e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 61 2e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 46 8e-06
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 40 4e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 33 0.047
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 30 0.44
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 1.0
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 27 3.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.5
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual 23 7.2
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 26 7.2
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 7.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 175 bits (425), Expect = 8e-45
Identities = 81/99 (81%), Positives = 86/99 (86%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 416
G + VGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 417 APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
APLNPK+NREK+TQI+FETFN PA +VLSLYASG
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASG 146
Score = 106 bits (254), Expect = 4e-24
Identities = 46/51 (90%), Positives = 50/51 (98%)
Frame = +1
Query: 100 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDS
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDS 52
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 484 PPCNVAIQACSRCTRPVRTTGIVLDFGERV 573
P VAIQA RTTGIVLD G+ V
Sbjct: 130 PAFYVAIQAVLSLYASGRTTGIVLDSGDGV 159
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 99.5 bits (237), Expect = 5e-22
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Frame = +3
Query: 249 LLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPL 425
+ VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL
Sbjct: 56 MFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
Query: 426 NPKANREKVTQIMFETFNTPAM*RRHPSVLSLYAS 530
N+EK+ + +ET N PA+ VL+LYAS
Sbjct: 116 ANIRNKEKIAEYFYETLNVPALSFSLQPVLALYAS 150
Score = 58.8 bits (136), Expect = 8e-10
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +1
Query: 118 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 249
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKD 55
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 99.1 bits (236), Expect = 6e-22
Identities = 42/104 (40%), Positives = 71/104 (68%)
Frame = +3
Query: 222 RDGRYGTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 401
+ G + ++VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 402 VLLTEAPLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
+LLTE P+NP ANREK+ + MFE + + +VLSLYA G
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQG 146
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 106 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 210
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 88.6 bits (210), Expect = 9e-19
Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Frame = +3
Query: 255 VGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 431
+G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP
Sbjct: 76 IGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNP 135
Query: 432 KANREKVTQIMFETFNTPAM*RRHPSVLSLYAS 530
NRE +IMFE+FN + +VL+L AS
Sbjct: 136 PENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 118 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 201
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.3 bits (142), Expect = 2e-10
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +3
Query: 222 RDGRYGTEGLLVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 398
RD + LVG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 399 PVLLTEAPLNPKANREKVTQIMFETFNTPAM 491
P+ +TE NP R +T+++FE +N P++
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSV 147
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 118 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 213
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 61.3 bits (142), Expect = 2e-10
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Frame = +3
Query: 228 GRYGTEGLLVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 404
G + L G+E K + +K I +G V NWD +W + +L+ P EHP+
Sbjct: 42 GEFSDGRRLFGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPI 101
Query: 405 LLTEAPLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
L+TE NP NR K + MFE+ PA + +ASG
Sbjct: 102 LITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASG 144
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 103 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 204
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 45.6 bits (103), Expect = 8e-06
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +3
Query: 255 VGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 428
V DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE N
Sbjct: 53 VVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWN 112
Query: 429 PKANREKVTQIMFETFNTPA 488
P++ R+++ + FE + PA
Sbjct: 113 PQSVRQQIMEAAFEQLHVPA 132
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 103 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 204
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 39.9 bits (89), Expect = 4e-04
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Frame = +3
Query: 303 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKVTQIMFE 470
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 471 TFNTPAM*RRHPSVLSLYASGPYH 542
P + ++ LYA G H
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILH 195
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 33.1 bits (72), Expect = 0.047
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 363 FYNELRVAPEEHPVLLTE--APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASGP 536
+Y L E+HP+LLT+ A L P+ + +V +I ++ NTP + ++ L
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAV 1458
Query: 537 YHRY 548
H Y
Sbjct: 1459 NHAY 1462
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 29.9 bits (64), Expect = 0.44
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 530 RSVPPVSCWTSGNVSSKTVAIYEGLR 607
R++ PV+ W S ++SS V+I EG R
Sbjct: 229 RNINPVALWKSSDISSHNVSIKEGKR 254
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -3
Query: 335 IPVSDDSVFDGVFEGQDTSFALCLISY*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 156
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 155 PALHIP 138
P L+ P
Sbjct: 123 PQLNSP 128
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 678 LPWKDSSTRNSRLNSFQINQTAGTGENPSWD 770
+PW SS NS +NS +QT P D
Sbjct: 394 IPWNTSSRSNSAINSKSHSQTGSEHSTPLLD 424
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -3
Query: 233 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 99
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 239 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 147
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 23.4 bits (48), Expect(2) = 7.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 551 CWTSGNVSSKTVAIYEGLRNFPQRPILEVWDFSRVGE 661
C+ S NV K + NF RPI + + VGE
Sbjct: 234 CFVSPNVGRKFRKFLQRYLNFSDRPIKVIAGKNVVGE 270
Score = 20.6 bits (41), Expect(2) = 7.2
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 752 GKSVVGQFKGGN 787
GK+VVG+F G +
Sbjct: 264 GKNVVGEFSGNH 275
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 687 KDSSTRNSRLNSFQINQTAGTGENPSWDNSKGET 788
K S R SR N F +++++G+ E SWDNS ++
Sbjct: 152 KKSKHRKSR-NKF-LDKSSGSMEIESWDNSTSDS 183
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 256 TKSPSVPYRPSRPDGGAFPRSRGTR 182
+K+PS PY SRP A S TR
Sbjct: 311 SKAPSYPYSSSRPSASASLASSPTR 335
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,681,724
Number of Sequences: 5004
Number of extensions: 85657
Number of successful extensions: 250
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -