BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30609 (805 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 175 8e-45 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 100 5e-22 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 99 6e-22 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 89 9e-19 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 61 2e-10 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 61 2e-10 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 46 8e-06 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 40 4e-04 SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 33 0.047 SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 30 0.44 SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 1.0 SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 27 3.1 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.1 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.5 SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual 23 7.2 SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 26 7.2 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 7.2 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 175 bits (425), Expect = 8e-45 Identities = 81/99 (81%), Positives = 86/99 (86%) Frame = +3 Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 416 G + VGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107 Query: 417 APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533 APLNPK+NREK+TQI+FETFN PA +VLSLYASG Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASG 146 Score = 106 bits (254), Expect = 4e-24 Identities = 46/51 (90%), Positives = 50/51 (98%) Frame = +1 Query: 100 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252 +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDS Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDS 52 Score = 27.5 bits (58), Expect = 2.4 Identities = 16/30 (53%), Positives = 17/30 (56%) Frame = +1 Query: 484 PPCNVAIQACSRCTRPVRTTGIVLDFGERV 573 P VAIQA RTTGIVLD G+ V Sbjct: 130 PAFYVAIQAVLSLYASGRTTGIVLDSGDGV 159 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 99.5 bits (237), Expect = 5e-22 Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%) Frame = +3 Query: 249 LLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPL 425 + VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL Sbjct: 56 MFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115 Query: 426 NPKANREKVTQIMFETFNTPAM*RRHPSVLSLYAS 530 N+EK+ + +ET N PA+ VL+LYAS Sbjct: 116 ANIRNKEKIAEYFYETLNVPALSFSLQPVLALYAS 150 Score = 58.8 bits (136), Expect = 8e-10 Identities = 25/44 (56%), Positives = 32/44 (72%) Frame = +1 Query: 118 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 249 + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKD 55 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 99.1 bits (236), Expect = 6e-22 Identities = 42/104 (40%), Positives = 71/104 (68%) Frame = +3 Query: 222 RDGRYGTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 401 + G + ++VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102 Query: 402 VLLTEAPLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533 +LLTE P+NP ANREK+ + MFE + + +VLSLYA G Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQG 146 Score = 48.0 bits (109), Expect = 2e-06 Identities = 21/35 (60%), Positives = 26/35 (74%) Frame = +1 Query: 106 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 210 E A +V+DNG+G K G+A D+ PR FPSIVGRP Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 88.6 bits (210), Expect = 9e-19 Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Frame = +3 Query: 255 VGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 431 +G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP Sbjct: 76 IGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNP 135 Query: 432 KANREKVTQIMFETFNTPAM*RRHPSVLSLYAS 530 NRE +IMFE+FN + +VL+L AS Sbjct: 136 PENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168 Score = 40.7 bits (91), Expect = 2e-04 Identities = 14/28 (50%), Positives = 23/28 (82%) Frame = +1 Query: 118 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 201 +++DNG+G K G+AG+DAP VFP+++ Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 61.3 bits (142), Expect = 2e-10 Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%) Frame = +3 Query: 222 RDGRYGTEGLLVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 398 RD + LVG++ + G ++ + P E +++NWD ME++ +TF +L + EH Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116 Query: 399 PVLLTEAPLNPKANREKVTQIMFETFNTPAM 491 P+ +TE NP R +T+++FE +N P++ Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSV 147 Score = 35.9 bits (79), Expect = 0.007 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = +1 Query: 118 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 213 LV+DNGS +AG+ G+ P+ VF ++V R R Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 61.3 bits (142), Expect = 2e-10 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 1/103 (0%) Frame = +3 Query: 228 GRYGTEGLLVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 404 G + L G+E K + +K I +G V NWD +W + +L+ P EHP+ Sbjct: 42 GEFSDGRRLFGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPI 101 Query: 405 LLTEAPLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533 L+TE NP NR K + MFE+ PA + +ASG Sbjct: 102 LITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASG 144 Score = 40.3 bits (90), Expect = 3e-04 Identities = 16/34 (47%), Positives = 24/34 (70%) Frame = +1 Query: 103 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 204 +EV+A+V+D GS + GF+G+D P+ V PS G Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 45.6 bits (103), Expect = 8e-06 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Frame = +3 Query: 255 VGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 428 V DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE N Sbjct: 53 VVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWN 112 Query: 429 PKANREKVTQIMFETFNTPA 488 P++ R+++ + FE + PA Sbjct: 113 PQSVRQQIMEAAFEQLHVPA 132 Score = 36.7 bits (81), Expect = 0.004 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = +1 Query: 103 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 204 EE+ +LV+D GS + G+AG+++P + PS G Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 39.9 bits (89), Expect = 4e-04 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Frame = +3 Query: 303 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKVTQIMFE 470 PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171 Query: 471 TFNTPAM*RRHPSVLSLYASGPYH 542 P + ++ LYA G H Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILH 195 >SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1666 Score = 33.1 bits (72), Expect = 0.047 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = +3 Query: 363 FYNELRVAPEEHPVLLTE--APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASGP 536 +Y L E+HP+LLT+ A L P+ + +V +I ++ NTP + ++ L Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAV 1458 Query: 537 YHRY 548 H Y Sbjct: 1459 NHAY 1462 >SPBC609.02 |ptn1||phosphatidylinositol-3,4, 5-trisphosphate3-phosphatase|Schizosaccharomyces pombe|chr 2|||Manual Length = 348 Score = 29.9 bits (64), Expect = 0.44 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +2 Query: 530 RSVPPVSCWTSGNVSSKTVAIYEGLR 607 R++ PV+ W S ++SS V+I EG R Sbjct: 229 RNINPVALWKSSDISSHNVSIKEGKR 254 >SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 277 Score = 28.7 bits (61), Expect = 1.0 Identities = 19/66 (28%), Positives = 29/66 (43%) Frame = -3 Query: 335 IPVSDDSVFDGVFEGQDTSFALCLISY*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 156 +P + +V +TSFAL S S PT + P +E + +S+PA Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122 Query: 155 PALHIP 138 P L+ P Sbjct: 123 PQLNSP 128 >SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizosaccharomyces pombe|chr 2|||Manual Length = 561 Score = 27.1 bits (57), Expect = 3.1 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +3 Query: 678 LPWKDSSTRNSRLNSFQINQTAGTGENPSWD 770 +PW SS NS +NS +QT P D Sbjct: 394 IPWNTSSRSNSAINSKSHSQTGSEHSTPLLD 424 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 26.6 bits (56), Expect = 4.1 Identities = 15/45 (33%), Positives = 18/45 (40%) Frame = -3 Query: 233 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 99 PT+ P P N S P PL+TTN TS+S Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 26.2 bits (55), Expect = 5.5 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -3 Query: 239 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 147 P+PT P LPT NT + P+ PAL Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101 >SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual Length = 415 Score = 23.4 bits (48), Expect(2) = 7.2 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = +2 Query: 551 CWTSGNVSSKTVAIYEGLRNFPQRPILEVWDFSRVGE 661 C+ S NV K + NF RPI + + VGE Sbjct: 234 CFVSPNVGRKFRKFLQRYLNFSDRPIKVIAGKNVVGE 270 Score = 20.6 bits (41), Expect(2) = 7.2 Identities = 7/12 (58%), Positives = 10/12 (83%) Frame = +2 Query: 752 GKSVVGQFKGGN 787 GK+VVG+F G + Sbjct: 264 GKNVVGEFSGNH 275 >SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 549 Score = 25.8 bits (54), Expect = 7.2 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +3 Query: 687 KDSSTRNSRLNSFQINQTAGTGENPSWDNSKGET 788 K S R SR N F +++++G+ E SWDNS ++ Sbjct: 152 KKSKHRKSR-NKF-LDKSSGSMEIESWDNSTSDS 183 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 25.8 bits (54), Expect = 7.2 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -1 Query: 256 TKSPSVPYRPSRPDGGAFPRSRGTR 182 +K+PS PY SRP A S TR Sbjct: 311 SKAPSYPYSSSRPSASASLASSPTR 335 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,681,724 Number of Sequences: 5004 Number of extensions: 85657 Number of successful extensions: 250 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 227 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 248 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 390427050 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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