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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30609
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   175   8e-45
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...   100   5e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    99   6e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    89   9e-19
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    61   2e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    61   2e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    46   8e-06
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    40   4e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    33   0.047
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    30   0.44 
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    29   1.0  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    27   3.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.5  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           23   7.2  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   7.2  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   7.2  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  175 bits (425), Expect = 8e-45
 Identities = 81/99 (81%), Positives = 86/99 (86%)
 Frame = +3

Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 416
           G +   VGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48  GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107

Query: 417 APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
           APLNPK+NREK+TQI+FETFN PA      +VLSLYASG
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASG 146



 Score =  106 bits (254), Expect = 4e-24
 Identities = 46/51 (90%), Positives = 50/51 (98%)
 Frame = +1

Query: 100 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
           +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDS
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDS 52



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +1

Query: 484 PPCNVAIQACSRCTRPVRTTGIVLDFGERV 573
           P   VAIQA        RTTGIVLD G+ V
Sbjct: 130 PAFYVAIQAVLSLYASGRTTGIVLDSGDGV 159


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 99.5 bits (237), Expect = 5e-22
 Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
 Frame = +3

Query: 249 LLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPL 425
           + VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L   PEEHP+LLTE PL
Sbjct: 56  MFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115

Query: 426 NPKANREKVTQIMFETFNTPAM*RRHPSVLSLYAS 530
               N+EK+ +  +ET N PA+      VL+LYAS
Sbjct: 116 ANIRNKEKIAEYFYETLNVPALSFSLQPVLALYAS 150



 Score = 58.8 bits (136), Expect = 8e-10
 Identities = 25/44 (56%), Positives = 32/44 (72%)
 Frame = +1

Query: 118 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 249
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+ VM    QKD
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKD 55


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 99.1 bits (236), Expect = 6e-22
 Identities = 42/104 (40%), Positives = 71/104 (68%)
 Frame = +3

Query: 222 RDGRYGTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 401
           + G    + ++VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P    
Sbjct: 43  KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102

Query: 402 VLLTEAPLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
           +LLTE P+NP ANREK+ + MFE +    +     +VLSLYA G
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQG 146



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 21/35 (60%), Positives = 26/35 (74%)
 Frame = +1

Query: 106 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 210
           E A +V+DNG+G  K G+A D+ PR  FPSIVGRP
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 88.6 bits (210), Expect = 9e-19
 Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
 Frame = +3

Query: 255 VGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 431
           +G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE PLNP
Sbjct: 76  IGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNP 135

Query: 432 KANREKVTQIMFETFNTPAM*RRHPSVLSLYAS 530
             NRE   +IMFE+FN   +     +VL+L AS
Sbjct: 136 PENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 14/28 (50%), Positives = 23/28 (82%)
 Frame = +1

Query: 118 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 201
           +++DNG+G  K G+AG+DAP  VFP+++
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
 Frame = +3

Query: 222 RDGRYGTEGLLVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 398
           RD +      LVG++   + G  ++ + P E  +++NWD ME++  +TF  +L +   EH
Sbjct: 58  RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116

Query: 399 PVLLTEAPLNPKANREKVTQIMFETFNTPAM 491
           P+ +TE   NP   R  +T+++FE +N P++
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSV 147



 Score = 35.9 bits (79), Expect = 0.007
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +1

Query: 118 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 213
           LV+DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
 Frame = +3

Query: 228 GRYGTEGLLVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 404
           G +     L G+E   K    + +K  I +G V NWD    +W +    +L+  P EHP+
Sbjct: 42  GEFSDGRRLFGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPI 101

Query: 405 LLTEAPLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
           L+TE   NP  NR K  + MFE+   PA         + +ASG
Sbjct: 102 LITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASG 144



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +1

Query: 103 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 204
           +EV+A+V+D GS   + GF+G+D P+ V PS  G
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = +3

Query: 255 VGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 428
           V DE Q    I  + +K    +GI+ +W+     W      +L+V P E+ +++TE   N
Sbjct: 53  VVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWN 112

Query: 429 PKANREKVTQIMFETFNTPA 488
           P++ R+++ +  FE  + PA
Sbjct: 113 PQSVRQQIMEAAFEQLHVPA 132



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 103 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 204
           EE+ +LV+D GS   + G+AG+++P  + PS  G
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +3

Query: 303 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKVTQIMFE 470
           PI+ G V +W+ ++  W H  Y+ L   P +    +PV L         +RE  TQ  FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171

Query: 471 TFNTPAM*RRHPSVLSLYASGPYH 542
               P     +  ++ LYA G  H
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILH 195


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 363  FYNELRVAPEEHPVLLTE--APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASGP 536
            +Y  L    E+HP+LLT+  A L P+ +  +V +I  ++ NTP +     ++  L     
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAV 1458

Query: 537  YHRY 548
             H Y
Sbjct: 1459 NHAY 1462


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 530 RSVPPVSCWTSGNVSSKTVAIYEGLR 607
           R++ PV+ W S ++SS  V+I EG R
Sbjct: 229 RNINPVALWKSSDISSHNVSIKEGKR 254


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -3

Query: 335 IPVSDDSVFDGVFEGQDTSFALCLISY*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 156
           +P  + +V        +TSFAL   S   S    PT +      P +E +    +S+PA 
Sbjct: 63  LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122

Query: 155 PALHIP 138
           P L+ P
Sbjct: 123 PQLNSP 128


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 678 LPWKDSSTRNSRLNSFQINQTAGTGENPSWD 770
           +PW  SS  NS +NS   +QT      P  D
Sbjct: 394 IPWNTSSRSNSAINSKSHSQTGSEHSTPLLD 424


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -3

Query: 233 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 99
           PT+ P     P    N     S P         PL+TTN  TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 239 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 147
           P+PT  P    LPT   NT +    P+ PAL
Sbjct: 74  PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 23.4 bits (48), Expect(2) = 7.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 551 CWTSGNVSSKTVAIYEGLRNFPQRPILEVWDFSRVGE 661
           C+ S NV  K     +   NF  RPI  +   + VGE
Sbjct: 234 CFVSPNVGRKFRKFLQRYLNFSDRPIKVIAGKNVVGE 270



 Score = 20.6 bits (41), Expect(2) = 7.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 752 GKSVVGQFKGGN 787
           GK+VVG+F G +
Sbjct: 264 GKNVVGEFSGNH 275


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 687 KDSSTRNSRLNSFQINQTAGTGENPSWDNSKGET 788
           K S  R SR N F +++++G+ E  SWDNS  ++
Sbjct: 152 KKSKHRKSR-NKF-LDKSSGSMEIESWDNSTSDS 183


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 256 TKSPSVPYRPSRPDGGAFPRSRGTR 182
           +K+PS PY  SRP   A   S  TR
Sbjct: 311 SKAPSYPYSSSRPSASASLASSPTR 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,681,724
Number of Sequences: 5004
Number of extensions: 85657
Number of successful extensions: 250
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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