Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30609
(805 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 186 2e-47
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 186 2e-47
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 186 2e-47
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 186 2e-47
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 186 2e-47
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 186 2e-47
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 186 2e-47
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 186 2e-47
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 186 2e-47
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 186 2e-47
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 184 5e-47
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 126 1e-29
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 115 3e-26
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 115 3e-26
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 114 8e-26
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 114 8e-26
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 99 3e-21
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 92 4e-19
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 73 2e-13
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 37 0.015
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 37 0.015
Z82258-1|CAB05122.2| 906|Caenorhabditis elegans Hypothetical pr... 31 1.3
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 30 2.2
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 29 3.9
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 29 3.9
Z46266-7|CAH60751.1| 470|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z46266-6|CAA86411.2| 515|Caenorhabditis elegans Hypothetical pr... 29 5.1
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ... 28 6.8
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ... 28 6.8
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 9.0
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 186 bits (452), Expect = 2e-47
Identities = 87/99 (87%), Positives = 90/99 (90%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 416
G + VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 417 APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
APLNPKANREK+TQIMFETFNTPAM +VLSLYASG
Sbjct: 109 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 147
Score = 115 bits (277), Expect = 3e-26
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +1
Query: 94 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 53
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 186 bits (452), Expect = 2e-47
Identities = 87/99 (87%), Positives = 90/99 (90%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 416
G + VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 417 APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
APLNPKANREK+TQIMFETFNTPAM +VLSLYASG
Sbjct: 109 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 147
Score = 114 bits (274), Expect = 8e-26
Identities = 51/53 (96%), Positives = 53/53 (100%)
Frame = +1
Query: 94 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 53
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 484 PPCNVAIQACSRCTRPVRTTGIVLDFGERV 573
P VAIQA RTTGIVLD G+ V
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 186 bits (452), Expect = 2e-47
Identities = 87/99 (87%), Positives = 90/99 (90%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 416
G + VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 417 APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
APLNPKANREK+TQIMFETFNTPAM +VLSLYASG
Sbjct: 109 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 147
Score = 115 bits (277), Expect = 3e-26
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +1
Query: 94 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 53
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 186 bits (452), Expect = 2e-47
Identities = 87/99 (87%), Positives = 90/99 (90%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 416
G + VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 417 APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
APLNPKANREK+TQIMFETFNTPAM +VLSLYASG
Sbjct: 109 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 147
Score = 115 bits (277), Expect = 3e-26
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +1
Query: 94 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 53
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 186 bits (452), Expect = 2e-47
Identities = 87/99 (87%), Positives = 90/99 (90%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 416
G + VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 417 APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
APLNPKANREK+TQIMFETFNTPAM +VLSLYASG
Sbjct: 109 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 147
Score = 115 bits (277), Expect = 3e-26
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +1
Query: 94 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 53
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 186 bits (452), Expect = 2e-47
Identities = 87/99 (87%), Positives = 90/99 (90%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 416
G + VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 417 APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
APLNPKANREK+TQIMFETFNTPAM +VLSLYASG
Sbjct: 109 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 147
Score = 112 bits (270), Expect = 2e-25
Identities = 49/53 (92%), Positives = 53/53 (100%)
Frame = +1
Query: 94 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
MCD++VAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 53
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 484 PPCNVAIQACSRCTRPVRTTGIVLDFGERV 573
P VAIQA RTTGIVLD G+ V
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 186 bits (452), Expect = 2e-47
Identities = 87/99 (87%), Positives = 90/99 (90%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 416
G + VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 417 APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
APLNPKANREK+TQIMFETFNTPAM +VLSLYASG
Sbjct: 109 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 147
Score = 115 bits (277), Expect = 3e-26
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +1
Query: 94 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 53
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 186 bits (452), Expect = 2e-47
Identities = 87/99 (87%), Positives = 90/99 (90%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 416
G + VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 5 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 64
Query: 417 APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
APLNPKANREK+TQIMFETFNTPAM +VLSLYASG
Sbjct: 65 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 103
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 186 bits (452), Expect = 2e-47
Identities = 87/99 (87%), Positives = 90/99 (90%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 416
G + VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 35 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 94
Query: 417 APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
APLNPKANREK+TQIMFETFNTPAM +VLSLYASG
Sbjct: 95 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 133
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +1
Query: 148 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 39
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 186 bits (452), Expect = 2e-47
Identities = 87/99 (87%), Positives = 90/99 (90%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 416
G + VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 417 APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
APLNPKANREK+TQIMFETFNTPAM +VLSLYASG
Sbjct: 109 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 147
Score = 115 bits (277), Expect = 3e-26
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +1
Query: 94 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 53
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 184 bits (449), Expect = 5e-47
Identities = 85/99 (85%), Positives = 90/99 (90%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 416
G + VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR+APEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTE 107
Query: 417 APLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
APLNPK+NREK+TQIMFETFNTPAM +VLSLYASG
Sbjct: 108 APLNPKSNREKMTQIMFETFNTPAMYVNIQAVLSLYASG 146
Score = 109 bits (261), Expect = 3e-24
Identities = 49/51 (96%), Positives = 51/51 (100%)
Frame = +1
Query: 100 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
+EE+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 52
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 126 bits (305), Expect = 1e-29
Identities = 56/101 (55%), Positives = 78/101 (77%), Gaps = 2/101 (1%)
Frame = +3
Query: 237 GTEG-LLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLL 410
G +G + +G +A+S RG+ +++YP+EHGIV NW DMEKIW + F ++L++ PEEHPVLL
Sbjct: 50 GLDGDIFIGPKAESNRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLL 109
Query: 411 TEAPLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
T+APLNP NRE+ +I FETFN PA+ + +VLSLYA+G
Sbjct: 110 TDAPLNPLKNRERSAEIFFETFNVPALYIQMQAVLSLYATG 150
Score = 52.0 bits (119), Expect = 5e-07
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1
Query: 118 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 234
+V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAG 49
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 115 bits (277), Expect = 3e-26
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +1
Query: 94 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 53
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/38 (86%), Positives = 34/38 (89%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 350
G + VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 115 bits (277), Expect = 3e-26
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +1
Query: 94 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
MCD+EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 53
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/38 (86%), Positives = 34/38 (89%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 350
G + VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 114 bits (274), Expect = 8e-26
Identities = 51/53 (96%), Positives = 53/53 (100%)
Frame = +1
Query: 94 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 53
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/38 (86%), Positives = 34/38 (89%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 350
G + VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 114 bits (274), Expect = 8e-26
Identities = 51/53 (96%), Positives = 53/53 (100%)
Frame = +1
Query: 94 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 252
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 53
Score = 67.7 bits (158), Expect = 9e-12
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3
Query: 237 GTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDM 341
G + VGDEAQSKRGILTLKYPIEHGIVTNWDDM
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 83
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 99.1 bits (236), Expect = 3e-21
Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Frame = +3
Query: 222 RDGRYGTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEH 398
R G + L+VG+E R +L + YP+++GIV NWDDM +W HTF E L + P+E
Sbjct: 46 RVGNIEIKDLMVGEECSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKEC 105
Query: 399 PVLLTEAPLNPKANREKVTQIMFETFNTPAM*RRHPSVLSLYASG 533
+LLTE PLNP +NREK+ Q+MFE + ++ +VL+LYA G
Sbjct: 106 KLLLTEPPLNPNSNREKMFQVMFEQYGFNSIYVAVQAVLTLYAQG 150
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1
Query: 118 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 210
+VVDNG+G K G+AG + P +FPS+VGRP
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRP 39
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 92.3 bits (219), Expect = 4e-19
Identities = 46/93 (49%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Frame = +3
Query: 255 VGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 431
+GDEA S T+KYPI HGIV +WD ME+ W + LR PE+H LLTE PLN
Sbjct: 67 IGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNT 126
Query: 432 KANREKVTQIMFETFNTPAM*RRHPSVLSLYAS 530
NRE +IMFE+FN P + +VL+L AS
Sbjct: 127 PENREYTAEIMFESFNVPGLYIAVQAVLALTAS 159
Score = 36.7 bits (81), Expect = 0.019
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 94 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 201
M ++ A V+DNG+G K G+AG+ P+ + PS +
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAI 36
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 72.9 bits (171), Expect = 2e-13
Identities = 39/103 (37%), Positives = 55/103 (53%)
Frame = +3
Query: 306 IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKVTQIMFETFNTP 485
++ G++ +W+ EKI H++ N L P EHPVL +E+ N +A REK+T+IMFE F P
Sbjct: 94 MKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLFSESSWNDRARREKLTEIMFEKFQVP 153
Query: 486 AM*RRHPSVLSLYASGPYHRYRAGLRGTCLPKPWPSTKGYAIS 614
A VLS +A G H G P GYA++
Sbjct: 154 AYYLSKNVVLSCFAQGRTHGLMVD-SGATQTSVVPVFDGYAVT 195
Score = 33.5 bits (73), Expect = 0.18
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 103 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 201
+EV+ LV D GS + GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +3
Query: 261 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 440
+E K + ++ PIE G V NWD ++IW TF + V + LT+ A
Sbjct: 49 EECSDKFSLFYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPAL 106
Query: 441 REKVTQIMFETF 476
+ ++I+F+ F
Sbjct: 107 PDVSSEILFDYF 118
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +3
Query: 261 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 440
+E K + ++ PIE G V NWD ++IW TF + V + LT+ A
Sbjct: 49 EECSDKFSLFYVR-PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPAL 106
Query: 441 REKVTQIMFETF 476
+ ++I+F+ F
Sbjct: 107 PDVSSEILFDYF 118
>Z82258-1|CAB05122.2| 906|Caenorhabditis elegans Hypothetical
protein C27H2.2a protein.
Length = 906
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = -1
Query: 355 CQIFSMSSQLVTIPC-SMGYLRVRIP---LLLCASSPTKSPSVPYRPSRPDG 212
CQ+FS QLVT+ SMG +++++ L L AS + P++ P DG
Sbjct: 251 CQLFSSQPQLVTMNLNSMGTIKLQLVVTWLPLLASKSSTKPTIAPNPPEIDG 302
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore complex
protein protein6, isoform a protein.
Length = 1562
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 690 DSSTRNSRLNSFQINQTAGTGENPSWDNSKG 782
DSS N +L S + +GTG N S DNS G
Sbjct: 1215 DSSGENGKLPSGNKDSGSGTGNNSSPDNSNG 1245
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 198 RGKAPPSGRDGRYGTEGLLVGDEAQSKRG 284
RGKA +GRDGR G EG Q +RG
Sbjct: 216 RGKAGHTGRDGRPGLEGTPGTRGVQGERG 244
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 389 RGTPSPAH*GSPQPQGQQREGDPDH 463
RG P PAH G P G +G P H
Sbjct: 111 RGAPPPAHHGHFGPPGHHFQGPPQH 135
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 419 SPQPQGQQREGDPDHVRNIQHARHVTSPSKRALAVRVRS-VPPVSCW 556
SP P+ QQR P + + SP +R R RS PPV W
Sbjct: 144 SPPPRRQQRSRSPPPAKRRRDQSRSKSPPRRNYRQRQRSGSPPVRNW 190
>Z46266-7|CAH60751.1| 470|Caenorhabditis elegans Hypothetical
protein C07B5.4b protein.
Length = 470
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -1
Query: 574 RHVPRSPARYRWYGPDAYSESTLGWRRYMAGVLN 473
R PR P+ YR + D Y + W + + ++N
Sbjct: 428 RMSPRPPSSYRHHSDDQYKDGKKSWSKSIGSLIN 461
>Z46266-6|CAA86411.2| 515|Caenorhabditis elegans Hypothetical
protein C07B5.4a protein.
Length = 515
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -1
Query: 574 RHVPRSPARYRWYGPDAYSESTLGWRRYMAGVLN 473
R PR P+ YR + D Y + W + + ++N
Sbjct: 473 RMSPRPPSSYRHHSDDQYKDGKKSWSKSIGSLIN 506
>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
protein C44E4.1a protein.
Length = 2712
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 511 CSRCTRPVRT-TGIVLDFGERVFQ 579
C RCT PVRT +G+ GE FQ
Sbjct: 1307 CPRCTVPVRTHSGVCESCGENAFQ 1330
>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
protein C44E4.1c protein.
Length = 2710
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 511 CSRCTRPVRT-TGIVLDFGERVFQ 579
C RCT PVRT +G+ GE FQ
Sbjct: 1307 CPRCTVPVRTHSGVCESCGENAFQ 1330
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 148 KAGFAGDDAPRAVFPSIVGRPRHQG 222
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,928,893
Number of Sequences: 27780
Number of extensions: 517048
Number of successful extensions: 1728
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1725
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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