Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30608
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   108   5e-25
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   107   1e-24
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    26   2.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   2.7  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   3.6  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   3.6  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   4.8  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   8.4  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  108 bits (259), Expect = 5e-25
 Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 3/138 (2%)
 Frame = +1

Query: 7   MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
           M  V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 187 LRHIYIRSPVGVKTVTKIFGG---RNVMELHLHISAGHQAVLHAKLCNRWRH*SLLSKFR 357
            RHIY+R  VGV  + K++GG   R +   H    +G    +  K+        +L K  
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGS---VQRKVVQSLEKIGVLEKSD 117

Query: 358 TVVAFFTTQGRRDLYRIA 411
                 + QG+RDL RIA
Sbjct: 118 NGGRRISQQGQRDLDRIA 135


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  107 bits (256), Expect = 1e-24
 Identities = 58/138 (42%), Positives = 80/138 (57%), Gaps = 3/138 (2%)
 Frame = +1

Query: 7   MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
           M  V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 187 LRHIYIRSPVGVKTVTKIFGG---RNVMELHLHISAGHQAVLHAKLCNRWRH*SLLSKFR 357
            RHIY+R  VGV  + K++GG   R +   H    +G    +  K+        +L K  
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGS---VQRKVVQSLEKIGVLEKSD 117

Query: 358 TVVAFFTTQGRRDLYRIA 411
                 + QG+RDL RIA
Sbjct: 118 NGGRRISQQGQRDLDRIA 135


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 192 SYLHSLTCWSQDCHQDLWWAQRNGV 266
           SY+HSL  W++   Q  W ++  GV
Sbjct: 432 SYVHSLDFWARLLSQAAWLSREKGV 456


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 192  SYLHSLTCWSQDCHQDLWWAQRNG 263
            S+ + +T + Q CH++LW+ +  G
Sbjct: 1149 SFQNLVTVFCQSCHKELWYQKNAG 1172


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 246 TKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQL 136
           ++D+G +L+ N+ +N+  TK+ S   I+       QL
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 186 PSSYLHSLTCWSQDCHQDLWWAQRNGVTPSHFCRASGSIARKALQSL 326
           P+S L +  C+S      +     N ++P H+C  S   + +A + L
Sbjct: 145 PTSALLAEICYSYGQRAYIGKCNMNNLSPDHYCEKSAESSLEATRQL 191


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 122 QLASKSWLRMTLIGSMCVVL 181
           +L SKSWL +  +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 170 CVVLPSFVIFTFAHLLESRL 229
           C+V  S V+F  AH+ E RL
Sbjct: 176 CIVSSSLVLFDNAHVTEGRL 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,665
Number of Sequences: 5004
Number of extensions: 36103
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)