Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30608
(497 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30) 59 2e-09
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 31 0.70
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_29747| Best HMM Match : Ank (HMM E-Value=0) 29 1.6
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_26998| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 4.9
SB_55044| Best HMM Match : Ion_trans (HMM E-Value=0.00041) 27 6.5
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0) 27 6.5
>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
Length = 92
Score = 58.8 bits (136), Expect = 2e-09
Identities = 39/114 (34%), Positives = 56/114 (49%)
Frame = +1
Query: 79 TGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRNV 258
+G +K+P+ +DLVKT +FKELAPYDPDW+Y+R G +N
Sbjct: 2 SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIRA----------------------GRKNR 39
Query: 259 MELHLHISAGHQAVLHAKLCNRWRH*SLLSKFRTVVAFFTTQGRRDLYRIAAQV 420
H G +V + L L+ K T T+QG+RD+ RIA+Q+
Sbjct: 40 GSAPSHFEVGSASVARSVL-KGLEQIKLVEKASTGGRNITSQGQRDMDRIASQI 92
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +3
Query: 252 QRNGVTPSHFCRASGSIARKALQSLEALKLVEQVQDGGR 368
+ G PSHF S S+AR L+ LE +KLVE+ GGR
Sbjct: 37 KNRGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGR 75
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 30.7 bits (66), Expect = 0.70
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 265 LHLHISAGHQAVLHAKLCNRWRH*SLLSKFRTVVAFFTTQGRRDL 399
LH+H G A+ NR++ + + R V+ TQGR+DL
Sbjct: 729 LHIHRGRGKTGAWSARRNNRYQWIQVDLRSRAVIKLIATQGRQDL 773
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 265 LHLHISAGHQAVLHAKLCNRWRH*SLLSKFRTVVAFFTTQGRRDL 399
LH+ G A+ NR++ + + R V+ TQGR+DL
Sbjct: 3535 LHIRRGRGKTGAWSARRNNRYQWIQIDLRSRAVIKLIATQGRQDL 3579
>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +1
Query: 19 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMD-LVKTARFKELAPYDPDWFYVRCAAILRH 195
TV V K KT ++VP ++ L T R E+ + W V+C
Sbjct: 221 TVNKVTGRKYTKTFVIMSGSNRPMRVPHSLEPLTLTNRVAEVT-FCRSWNAVKCTKYCAL 279
Query: 196 IYIRSPVGVKTVTKIFG 246
IY+ S + + V K+ G
Sbjct: 280 IYLHSRLDTQPVNKVIG 296
>SB_29747| Best HMM Match : Ank (HMM E-Value=0)
Length = 416
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 252 QRNGVTPSHFCRASGSIARKALQSLEALKLVEQVQDGGRI-LHH 380
+R+G +P H+ A G I R Q LEA V+Q D RI LH+
Sbjct: 371 ERDGKSPLHYAAAKGDI-RIIRQLLEAGSQVDQKDDEERIPLHY 413
>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 30 C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 149
C QDC + RC +KNG + T A G CK S + ++
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339
>SB_26998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/81 (25%), Positives = 33/81 (40%)
Frame = +2
Query: 125 LASKSWLRMTLIGSMCVVLPSFVIFTFAHLLESRLSPRSLVGAT*WSYTFTFLQGIRQYC 304
L + +L T +G +CV PS+ I + + L R VG + F G+ +C
Sbjct: 93 LCTTPFLVGTGLGGICVQRPSWSIQGLVGFVYNALLGRYRVGWVLCTTPFLVGTGLGGFC 152
Query: 305 TQSFAIVGGIEAC*ASSGRWS 367
T F + G+ WS
Sbjct: 153 TTPFLVGTGLGGICVQRPSWS 173
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 265 LHLHISAGHQAVLHAKLCNRWRH*SLLSKFRTVVAFFTTQGRRDL 399
LH+ G A+ NR++ + + R V+ TQGR+DL
Sbjct: 105 LHIRRGRGKTGAWSARRNNRYQWIQIDLRSRAVIKLIATQGRQDL 149
>SB_55044| Best HMM Match : Ion_trans (HMM E-Value=0.00041)
Length = 855
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 246 WAQRNGVTPSHFCRASGSIARKALQSLEALK 338
+A+RNG + F + SGS+ A+Q ++ LK
Sbjct: 153 YAERNGPSADEFRKLSGSVQDFAVQLIDPLK 183
>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 454
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 216 WSQDCHQDLWWAQRNGVTPSHF 281
++QD H W Q NG TPS +
Sbjct: 34 YTQDLHDQFDWTQINGSTPSSY 55
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,730,867
Number of Sequences: 59808
Number of extensions: 294650
Number of successful extensions: 698
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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