Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30608
(497 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein pro... 118 9e-27
BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19 p... 118 9e-27
BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19 p... 118 9e-27
BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19 p... 118 9e-27
AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19 p... 118 9e-27
BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19 p... 117 2e-26
AY210419-1|AAO34702.1| 3501|Homo sapiens CUB and sushi multiple ... 30 5.1
AB114605-1|BAC82444.1| 3667|Homo sapiens CSMD3 protein isoform 2... 30 5.1
AB114604-1|BAC82443.1| 3707|Homo sapiens CSMD3 protein isoform 1... 30 5.1
AB067481-1|BAB67787.2| 2977|Homo sapiens KIAA1894 protein protein. 30 5.1
BC012476-1|AAH12476.2| 468|Homo sapiens hypothetical protein LO... 29 6.8
AY358212-1|AAQ88579.1| 468|Homo sapiens PPWG6510 protein. 29 6.8
X17519-2|CAB43537.1| 363|Homo sapiens Leu-8 antigen short form ... 29 9.0
X17519-1|CAB43536.1| 385|Homo sapiens protein ( Human mRNA for ... 29 9.0
X16150-1|CAA34275.1| 372|Homo sapiens protein ( Human Lyam-1 mR... 29 9.0
X16070-1|CAA34203.1| 372|Homo sapiens pln homing receptor protein. 29 9.0
M32414-1|AAB60700.1| 372|Homo sapiens protein ( Human leukocyte... 29 9.0
M25280-1|AAC63053.1| 372|Homo sapiens LNHR protein. 29 9.0
BC020758-1|AAH20758.1| 375|Homo sapiens SELL protein protein. 29 9.0
AY367061-1|AAQ67701.1| 211|Homo sapiens L-selectin protein. 29 9.0
AY233976-1|AAO48272.1| 372|Homo sapiens selectin L (lymphocyte ... 29 9.0
AL021940-1|CAI19356.1| 385|Homo sapiens selectin L (lymphocyte ... 29 9.0
AJ246000-1|CAB55488.1| 385|Homo sapiens L-selectin protein. 29 9.0
>M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein
protein.
Length = 145
Score = 118 bits (285), Expect = 9e-27
Identities = 64/139 (46%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Frame = +1
Query: 7 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 187 LRHIYIRSPVGVKTVTKIFGGRNVM-ELHLHISAGHQAVLHAKLCNRWRH*SLLSKFRTV 363
RH+Y+R GV ++TKI+GGR + H S G ++V ++ ++ K +
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVAR-RVLQALEGLKMVEKDQDG 119
Query: 364 VAFFTTQGRRDLYRIAAQV 420
T QG+RDL RIA QV
Sbjct: 120 GRKLTPQGQRDLDRIAGQV 138
>BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 118 bits (285), Expect = 9e-27
Identities = 64/139 (46%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Frame = +1
Query: 7 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 187 LRHIYIRSPVGVKTVTKIFGGRNVM-ELHLHISAGHQAVLHAKLCNRWRH*SLLSKFRTV 363
RH+Y+R GV ++TKI+GGR + H S G ++V ++ ++ K +
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVAR-RVLQALEGLKMVEKDQDG 119
Query: 364 VAFFTTQGRRDLYRIAAQV 420
T QG+RDL RIA QV
Sbjct: 120 GRKLTPQGQRDLDRIAGQV 138
>BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 118 bits (285), Expect = 9e-27
Identities = 64/139 (46%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Frame = +1
Query: 7 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 187 LRHIYIRSPVGVKTVTKIFGGRNVM-ELHLHISAGHQAVLHAKLCNRWRH*SLLSKFRTV 363
RH+Y+R GV ++TKI+GGR + H S G ++V ++ ++ K +
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVAR-RVLQALEGLKMVEKDQDG 119
Query: 364 VAFFTTQGRRDLYRIAAQV 420
T QG+RDL RIA QV
Sbjct: 120 GRKLTPQGQRDLDRIAGQV 138
>BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 118 bits (285), Expect = 9e-27
Identities = 64/139 (46%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Frame = +1
Query: 7 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 187 LRHIYIRSPVGVKTVTKIFGGRNVM-ELHLHISAGHQAVLHAKLCNRWRH*SLLSKFRTV 363
RH+Y+R GV ++TKI+GGR + H S G ++V ++ ++ K +
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVAR-RVLQALEGLKMVEKDQDG 119
Query: 364 VAFFTTQGRRDLYRIAAQV 420
T QG+RDL RIA QV
Sbjct: 120 GRKLTPQGQRDLDRIAGQV 138
>AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 118 bits (285), Expect = 9e-27
Identities = 64/139 (46%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Frame = +1
Query: 7 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
M VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 187 LRHIYIRSPVGVKTVTKIFGGRNVM-ELHLHISAGHQAVLHAKLCNRWRH*SLLSKFRTV 363
RH+Y+R GV ++TKI+GGR + H S G ++V ++ ++ K +
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVAR-RVLQALEGLKMVEKDQDG 119
Query: 364 VAFFTTQGRRDLYRIAAQV 420
T QG+RDL RIA QV
Sbjct: 120 GRKLTPQGQRDLDRIAGQV 138
>BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19
protein.
Length = 157
Score = 117 bits (282), Expect = 2e-26
Identities = 63/136 (46%), Positives = 86/136 (63%), Gaps = 1/136 (0%)
Frame = +1
Query: 16 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 195
VTVKDV Q + V+ +AA LKK+GK+KVPE +D VK A+ KELAPYD +WFY R A+ RH
Sbjct: 16 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARH 75
Query: 196 IYIRSPVGVKTVTKIFGGRNVM-ELHLHISAGHQAVLHAKLCNRWRH*SLLSKFRTVVAF 372
+Y+R GV ++TKI+GGR + H S G ++V ++ ++ K +
Sbjct: 76 LYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVAR-RVLQALEGLKMVEKDQDGGRK 134
Query: 373 FTTQGRRDLYRIAAQV 420
T QG+RDL RIA QV
Sbjct: 135 LTPQGQRDLDRIAGQV 150
>AY210419-1|AAO34702.1| 3501|Homo sapiens CUB and sushi multiple
domains 3 protein.
Length = 3501
Score = 29.9 bits (64), Expect = 5.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 269 TFTFLQGIRQYCTQSFAIVGGIEAC*ASSGRWSHSSPHKVDETFT 403
+F + + C F +VG + G WS SSPH ++ T T
Sbjct: 3100 SFIYQSEVSFSCNFPFILVGSSTRICQADGTWSGSSPHCIEPTQT 3144
>AB114605-1|BAC82444.1| 3667|Homo sapiens CSMD3 protein isoform 2
protein.
Length = 3667
Score = 29.9 bits (64), Expect = 5.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 269 TFTFLQGIRQYCTQSFAIVGGIEAC*ASSGRWSHSSPHKVDETFT 403
+F + + C F +VG + G WS SSPH ++ T T
Sbjct: 3266 SFIYQSEVSFSCNFPFILVGSSTRICQADGTWSGSSPHCIEPTQT 3310
>AB114604-1|BAC82443.1| 3707|Homo sapiens CSMD3 protein isoform 1
protein.
Length = 3707
Score = 29.9 bits (64), Expect = 5.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 269 TFTFLQGIRQYCTQSFAIVGGIEAC*ASSGRWSHSSPHKVDETFT 403
+F + + C F +VG + G WS SSPH ++ T T
Sbjct: 3306 SFIYQSEVSFSCNFPFILVGSSTRICQADGTWSGSSPHCIEPTQT 3350
>AB067481-1|BAB67787.2| 2977|Homo sapiens KIAA1894 protein protein.
Length = 2977
Score = 29.9 bits (64), Expect = 5.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 269 TFTFLQGIRQYCTQSFAIVGGIEAC*ASSGRWSHSSPHKVDETFT 403
+F + + C F +VG + G WS SSPH ++ T T
Sbjct: 2576 SFIYQSEVSFSCNFPFILVGSSTRICQADGTWSGSSPHCIEPTQT 2620
>BC012476-1|AAH12476.2| 468|Homo sapiens hypothetical protein
LOC116236 protein.
Length = 468
Score = 29.5 bits (63), Expect = 6.8
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +1
Query: 232 TKIFGGRNVMELHLHISAGHQAVLHAKLCNRWRH*SLLSKFRTVVAFFTTQGR 390
T++F L L GH L + W H +L FR + FF T+ R
Sbjct: 372 TELFHSNPYFFLLLSRHGGHCGFLRQEPLPAWSHEVILESFRALTEFFRTEER 424
>AY358212-1|AAQ88579.1| 468|Homo sapiens PPWG6510 protein.
Length = 468
Score = 29.5 bits (63), Expect = 6.8
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +1
Query: 232 TKIFGGRNVMELHLHISAGHQAVLHAKLCNRWRH*SLLSKFRTVVAFFTTQGR 390
T++F L L GH L + W H +L FR + FF T+ R
Sbjct: 372 TELFHSNPYFFLLLSRHGGHCGFLRQEPLPAWSHEVILESFRALTEFFRTEER 424
>X17519-2|CAB43537.1| 363|Homo sapiens Leu-8 antigen short form
protein.
Length = 363
Score = 29.1 bits (62), Expect = 9.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 269 TFTFLQGIRQYCTQSFAIVGGIEAC*ASSGRWSHSSP--HKVDETFT 403
+F+F C++ ++G + SSG WS+ SP K+D++F+
Sbjct: 291 SFSFTSACTFICSEGTELIGKKKTICESSGIWSNPSPICQKLDKSFS 337
>X17519-1|CAB43536.1| 385|Homo sapiens protein ( Human mRNA for
Leu-8 pan leukocyte antigen. ).
Length = 385
Score = 29.1 bits (62), Expect = 9.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 269 TFTFLQGIRQYCTQSFAIVGGIEAC*ASSGRWSHSSP--HKVDETFT 403
+F+F C++ ++G + SSG WS+ SP K+D++F+
Sbjct: 291 SFSFTSACTFICSEGTELIGKKKTICESSGIWSNPSPICQKLDKSFS 337
>X16150-1|CAA34275.1| 372|Homo sapiens protein ( Human Lyam-1 mRNA
for leukocyte adhesion molecule-1. ).
Length = 372
Score = 29.1 bits (62), Expect = 9.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 269 TFTFLQGIRQYCTQSFAIVGGIEAC*ASSGRWSHSSP--HKVDETFT 403
+F+F C++ ++G + SSG WS+ SP K+D++F+
Sbjct: 278 SFSFTSACTFICSEGTELIGKKKTICESSGIWSNPSPICQKLDKSFS 324
>X16070-1|CAA34203.1| 372|Homo sapiens pln homing receptor protein.
Length = 372
Score = 29.1 bits (62), Expect = 9.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 269 TFTFLQGIRQYCTQSFAIVGGIEAC*ASSGRWSHSSP--HKVDETFT 403
+F+F C++ ++G + SSG WS+ SP K+D++F+
Sbjct: 278 SFSFTSACTFICSEGTELIGKKKTICESSGIWSNPSPICQKLDKSFS 324
>M32414-1|AAB60700.1| 372|Homo sapiens protein ( Human leukocyte
adhesion molecule-1 (LAM-1), exon 9. ).
Length = 372
Score = 29.1 bits (62), Expect = 9.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 269 TFTFLQGIRQYCTQSFAIVGGIEAC*ASSGRWSHSSP--HKVDETFT 403
+F+F C++ ++G + SSG WS+ SP K+D++F+
Sbjct: 278 SFSFTSACTFICSEGTELIGKKKTICESSGIWSNPSPICQKLDKSFS 324
>M25280-1|AAC63053.1| 372|Homo sapiens LNHR protein.
Length = 372
Score = 29.1 bits (62), Expect = 9.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 269 TFTFLQGIRQYCTQSFAIVGGIEAC*ASSGRWSHSSP--HKVDETFT 403
+F+F C++ ++G + SSG WS+ SP K+D++F+
Sbjct: 278 SFSFTSACTFICSEGTELIGKKKTICESSGIWSNPSPICQKLDKSFS 324
>BC020758-1|AAH20758.1| 375|Homo sapiens SELL protein protein.
Length = 375
Score = 29.1 bits (62), Expect = 9.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 269 TFTFLQGIRQYCTQSFAIVGGIEAC*ASSGRWSHSSP--HKVDETFT 403
+F+F C++ ++G + SSG WS+ SP K+D++F+
Sbjct: 291 SFSFTSACTFICSEGTELIGKKKTICESSGIWSNPSPICQKLDKSFS 337
>AY367061-1|AAQ67701.1| 211|Homo sapiens L-selectin protein.
Length = 211
Score = 29.1 bits (62), Expect = 9.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 269 TFTFLQGIRQYCTQSFAIVGGIEAC*ASSGRWSHSSP--HKVDETFT 403
+F+F C++ ++G + SSG WS+ SP K+D++F+
Sbjct: 134 SFSFTSACTFICSEGTELIGKKKTICESSGIWSNPSPICQKLDKSFS 180
>AY233976-1|AAO48272.1| 372|Homo sapiens selectin L (lymphocyte
adhesion molecule 1) protein.
Length = 372
Score = 29.1 bits (62), Expect = 9.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 269 TFTFLQGIRQYCTQSFAIVGGIEAC*ASSGRWSHSSP--HKVDETFT 403
+F+F C++ ++G + SSG WS+ SP K+D++F+
Sbjct: 278 SFSFTSACTFICSEGTELIGKKKTICESSGIWSNPSPICQKLDKSFS 324
>AL021940-1|CAI19356.1| 385|Homo sapiens selectin L (lymphocyte
adhesion molecule 1) protein.
Length = 385
Score = 29.1 bits (62), Expect = 9.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 269 TFTFLQGIRQYCTQSFAIVGGIEAC*ASSGRWSHSSP--HKVDETFT 403
+F+F C++ ++G + SSG WS+ SP K+D++F+
Sbjct: 291 SFSFTSACTFICSEGTELIGKKKTICESSGIWSNPSPICQKLDKSFS 337
>AJ246000-1|CAB55488.1| 385|Homo sapiens L-selectin protein.
Length = 385
Score = 29.1 bits (62), Expect = 9.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 269 TFTFLQGIRQYCTQSFAIVGGIEAC*ASSGRWSHSSP--HKVDETFT 403
+F+F C++ ++G + SSG WS+ SP K+D++F+
Sbjct: 291 SFSFTSACTFICSEGTELIGKKKTICESSGIWSNPSPICQKLDKSFS 337
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,735,740
Number of Sequences: 237096
Number of extensions: 1395123
Number of successful extensions: 3122
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3110
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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