Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30608
(497 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118868-1|AAM50728.1| 156|Drosophila melanogaster GM26647p pro... 143 1e-34
AF216206-1|AAF65682.1| 156|Drosophila melanogaster ribosomal pr... 143 1e-34
AE014298-2436|AAN09413.1| 156|Drosophila melanogaster CG4464-PC... 143 1e-34
AE014298-2435|AAN09412.1| 156|Drosophila melanogaster CG4464-PB... 143 1e-34
AE014298-2434|AAF48633.1| 156|Drosophila melanogaster CG4464-PA... 143 1e-34
X73153-1|CAA51677.1| 156|Drosophila melanogaster ribosomal prot... 142 2e-34
AY119257-1|AAM51117.1| 155|Drosophila melanogaster SD22440p pro... 107 8e-24
AE014297-3411|AAN13960.1| 155|Drosophila melanogaster CG5338-PB... 107 8e-24
>AY118868-1|AAM50728.1| 156|Drosophila melanogaster GM26647p
protein.
Length = 156
Score = 143 bits (346), Expect = 1e-34
Identities = 74/146 (50%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Frame = +1
Query: 7 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
M VTVKD++Q + K VA LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1 MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60
Query: 187 LRHIYIRSPVGVKTVTKIFGGRNVMELH-LHISAGHQAVLHAKLCNRWRH*SLLSKFRTV 363
LRH+Y RSP GV ++TKI+GGR +H H K H L+ K
Sbjct: 61 LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAAR-KALQALEHARLVEKHPDG 119
Query: 364 VAFFTTQGRRDLYRIAAQVPLKGQAA 441
++ G+RDL RIA Q+ K + A
Sbjct: 120 GRKLSSIGQRDLDRIANQIVFKQRDA 145
>AF216206-1|AAF65682.1| 156|Drosophila melanogaster ribosomal
protein S19 protein.
Length = 156
Score = 143 bits (346), Expect = 1e-34
Identities = 74/146 (50%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Frame = +1
Query: 7 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
M VTVKD++Q + K VA LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1 MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60
Query: 187 LRHIYIRSPVGVKTVTKIFGGRNVMELH-LHISAGHQAVLHAKLCNRWRH*SLLSKFRTV 363
LRH+Y RSP GV ++TKI+GGR +H H K H L+ K
Sbjct: 61 LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAAR-KALQALEHARLVEKHPDG 119
Query: 364 VAFFTTQGRRDLYRIAAQVPLKGQAA 441
++ G+RDL RIA Q+ K + A
Sbjct: 120 GRKLSSIGQRDLDRIANQIVFKQRDA 145
>AE014298-2436|AAN09413.1| 156|Drosophila melanogaster CG4464-PC,
isoform C protein.
Length = 156
Score = 143 bits (346), Expect = 1e-34
Identities = 74/146 (50%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Frame = +1
Query: 7 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
M VTVKD++Q + K VA LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1 MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60
Query: 187 LRHIYIRSPVGVKTVTKIFGGRNVMELH-LHISAGHQAVLHAKLCNRWRH*SLLSKFRTV 363
LRH+Y RSP GV ++TKI+GGR +H H K H L+ K
Sbjct: 61 LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAAR-KALQALEHARLVEKHPDG 119
Query: 364 VAFFTTQGRRDLYRIAAQVPLKGQAA 441
++ G+RDL RIA Q+ K + A
Sbjct: 120 GRKLSSIGQRDLDRIANQIVFKQRDA 145
>AE014298-2435|AAN09412.1| 156|Drosophila melanogaster CG4464-PB,
isoform B protein.
Length = 156
Score = 143 bits (346), Expect = 1e-34
Identities = 74/146 (50%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Frame = +1
Query: 7 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
M VTVKD++Q + K VA LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1 MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60
Query: 187 LRHIYIRSPVGVKTVTKIFGGRNVMELH-LHISAGHQAVLHAKLCNRWRH*SLLSKFRTV 363
LRH+Y RSP GV ++TKI+GGR +H H K H L+ K
Sbjct: 61 LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAAR-KALQALEHARLVEKHPDG 119
Query: 364 VAFFTTQGRRDLYRIAAQVPLKGQAA 441
++ G+RDL RIA Q+ K + A
Sbjct: 120 GRKLSSIGQRDLDRIANQIVFKQRDA 145
>AE014298-2434|AAF48633.1| 156|Drosophila melanogaster CG4464-PA,
isoform A protein.
Length = 156
Score = 143 bits (346), Expect = 1e-34
Identities = 74/146 (50%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Frame = +1
Query: 7 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
M VTVKD++Q + K VA LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1 MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60
Query: 187 LRHIYIRSPVGVKTVTKIFGGRNVMELH-LHISAGHQAVLHAKLCNRWRH*SLLSKFRTV 363
LRH+Y RSP GV ++TKI+GGR +H H K H L+ K
Sbjct: 61 LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAAR-KALQALEHARLVEKHPDG 119
Query: 364 VAFFTTQGRRDLYRIAAQVPLKGQAA 441
++ G+RDL RIA Q+ K + A
Sbjct: 120 GRKLSSIGQRDLDRIANQIVFKQRDA 145
>X73153-1|CAA51677.1| 156|Drosophila melanogaster ribosomal protein
S19 protein.
Length = 156
Score = 142 bits (345), Expect = 2e-34
Identities = 73/146 (50%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Frame = +1
Query: 7 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
M VTVKD++Q + K VA LKKTGK+KVP+ MD++KTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1 MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIIKTAKFKELAPYDPDWFYVRCASI 60
Query: 187 LRHIYIRSPVGVKTVTKIFGGRNVMELH-LHISAGHQAVLHAKLCNRWRH*SLLSKFRTV 363
LRH+Y RSP GV ++TKI+GGR +H H K H L+ K
Sbjct: 61 LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAAR-KALQALEHARLVEKHPDG 119
Query: 364 VAFFTTQGRRDLYRIAAQVPLKGQAA 441
++ G+RDL RIA Q+ K + A
Sbjct: 120 GRKLSSIGQRDLDRIANQIVFKQRDA 145
>AY119257-1|AAM51117.1| 155|Drosophila melanogaster SD22440p
protein.
Length = 155
Score = 107 bits (257), Expect = 8e-24
Identities = 57/143 (39%), Positives = 83/143 (58%), Gaps = 2/143 (1%)
Frame = +1
Query: 7 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
M VTVK+++Q + K +AA LKK+GK+ VPE +KT +FKE AP D DWFY RCA+I
Sbjct: 1 MPGVTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASI 60
Query: 187 LRHIYIRSPVGVKTVTKIFGG--RNVMELHLHISAGHQAVLHAKLCNRWRH*SLLSKFRT 360
+RH+Y+RSP GV TK++ G RN + H + + K +++ +
Sbjct: 61 MRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCI--RKALQALEAANMVERHPD 118
Query: 361 VVAFFTTQGRRDLYRIAAQVPLK 429
T QG+R+L RIA ++ K
Sbjct: 119 GGRKLTPQGQRNLDRIANKIVAK 141
>AE014297-3411|AAN13960.1| 155|Drosophila melanogaster CG5338-PB
protein.
Length = 155
Score = 107 bits (257), Expect = 8e-24
Identities = 57/143 (39%), Positives = 83/143 (58%), Gaps = 2/143 (1%)
Frame = +1
Query: 7 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 186
M VTVK+++Q + K +AA LKK+GK+ VPE +KT +FKE AP D DWFY RCA+I
Sbjct: 1 MPGVTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASI 60
Query: 187 LRHIYIRSPVGVKTVTKIFGG--RNVMELHLHISAGHQAVLHAKLCNRWRH*SLLSKFRT 360
+RH+Y+RSP GV TK++ G RN + H + + K +++ +
Sbjct: 61 MRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCI--RKALQALEAANMVERHPD 118
Query: 361 VVAFFTTQGRRDLYRIAAQVPLK 429
T QG+R+L RIA ++ K
Sbjct: 119 GGRKLTPQGQRNLDRIANKIVAK 141
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,282,701
Number of Sequences: 53049
Number of extensions: 433279
Number of successful extensions: 1292
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -