Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30608
(497 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical pr... 107 6e-24
AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal pro... 107 6e-24
Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical pr... 27 7.6
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z37092-11|CAA85461.2| 334|Caenorhabditis elegans Hypothetical p... 27 10.0
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 27 10.0
>Z81586-2|CAB04689.1| 146|Caenorhabditis elegans Hypothetical
protein T05F1.3 protein.
Length = 146
Score = 107 bits (256), Expect = 6e-24
Identities = 65/150 (43%), Positives = 86/150 (57%), Gaps = 6/150 (4%)
Frame = +1
Query: 10 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 189
R+ ++KDV+Q + K++A LKK+GKVKVPE DLVK KELAP DPDWFY R A++
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62
Query: 190 RHIYIRSPVGVKTVTKIFGG---RNVMELHLHISAGH---QAVLHAKLCNRWRH*SLLSK 351
RH+Y R P G+ K++GG R V H SAG+ +AV + +W K
Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKI-KWVEKHPDGK 120
Query: 352 FRTVVAFFTTQGRRDLYRIAAQVPLKGQAA 441
R + QGR+DL RIA + GQ A
Sbjct: 121 GR----ILSKQGRKDLDRIATSLRSSGQQA 146
>AF016512-1|AAB69445.1| 146|Caenorhabditis elegans ribosomal
protein S19 protein.
Length = 146
Score = 107 bits (256), Expect = 6e-24
Identities = 65/150 (43%), Positives = 86/150 (57%), Gaps = 6/150 (4%)
Frame = +1
Query: 10 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 189
R+ ++KDV+Q + K++A LKK+GKVKVPE DLVK KELAP DPDWFY R A++
Sbjct: 3 RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62
Query: 190 RHIYIRSPVGVKTVTKIFGG---RNVMELHLHISAGH---QAVLHAKLCNRWRH*SLLSK 351
RH+Y R P G+ K++GG R V H SAG+ +AV + +W K
Sbjct: 63 RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKI-KWVEKHPDGK 120
Query: 352 FRTVVAFFTTQGRRDLYRIAAQVPLKGQAA 441
R + QGR+DL RIA + GQ A
Sbjct: 121 GR----ILSKQGRKDLDRIATSLRSSGQQA 146
>Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 255 VAPTKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 130
++ D+GD S + V +DGS H++ I++I +++
Sbjct: 490 ISRRSDMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 531
>Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 255 VAPTKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 130
++ D+GD S + V +DGS H++ I++I +++
Sbjct: 719 ISRRSDMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 760
>Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 255 VAPTKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 130
++ D+GD S + V +DGS H++ I++I +++
Sbjct: 490 ISRRSDMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 531
>Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 255 VAPTKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQLFE 130
++ D+GD S + V +DGS H++ I++I +++
Sbjct: 719 ISRRSDMGDKRKSYTTSIVIAPRDGSPDHVDQIQIIERDVYD 760
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical
protein K10D2.3 protein.
Length = 1425
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 378 GEECDHRPELAQQASMPPTIAKLCVQYCLMPCRNVKV*LHY 256
G DH E+ +++ T + V+ C M C N ++ LH+
Sbjct: 414 GHPADHSMEMGTPSTIIFTFKGVRVKLCWMSCFNHRIQLHF 454
>Z37092-11|CAA85461.2| 334|Caenorhabditis elegans Hypothetical
protein F44F4.13 protein.
Length = 334
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 170 CVVLPSFVIFTFAHLLESRL 229
C+ +PS +IFTF + RL
Sbjct: 289 CIAIPSLIIFTFRFIKNQRL 308
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 402 VKVSSTLC-GEECDHRPELAQQASMPPTIAKLCVQYCLMPC 283
V V C GEEC+ E + TI +LC C +PC
Sbjct: 705 VHVCQRTCHGEECEKEGEKCTKKC--ETIRELCEHPCALPC 743
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,799,322
Number of Sequences: 27780
Number of extensions: 214609
Number of successful extensions: 567
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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