Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30608
(497 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 97 4e-21
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 97 6e-21
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 96 1e-20
At4g16095.1 68417.m02440 disease resistance protein-related cont... 31 0.33
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote... 29 1.7
At2g33670.1 68415.m04126 seven transmembrane MLO family protein ... 29 2.3
At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1... 27 5.3
At5g16500.1 68418.m01928 protein kinase family protein contains ... 27 7.0
At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,... 27 9.3
At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,... 27 9.3
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 97.5 bits (232), Expect = 4e-21
Identities = 40/77 (51%), Positives = 57/77 (74%)
Frame = +1
Query: 19 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 198
TVKDV + VK AAHLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 199 YIRSPVGVKTVTKIFGG 249
Y+R +GV +I+GG
Sbjct: 66 YLRGGLGVGAFRRIYGG 82
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +3
Query: 249 AQRNGVTPSHFCRASGSIARKALQSLEALKLVEQVQDGGR 368
++RNG P HFC++SG +AR LQ L+ + +V+ GGR
Sbjct: 83 SKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGR 122
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 97.1 bits (231), Expect = 6e-21
Identities = 41/77 (53%), Positives = 56/77 (72%)
Frame = +1
Query: 19 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 198
TVKDV VK A+HLK++GK+++P D+VKT R KELAPYDPDW+Y+R A++ R I
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65
Query: 199 YIRSPVGVKTVTKIFGG 249
Y+R +GV +I+GG
Sbjct: 66 YLRGGLGVGAFRRIYGG 82
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = +3
Query: 249 AQRNGVTPSHFCRASGSIARKALQSLEALKLVEQVQDGGR 368
++RNG P HFC++SG IAR LQ LE + +VE GGR
Sbjct: 83 SKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGR 122
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 96.3 bits (229), Expect = 1e-20
Identities = 39/77 (50%), Positives = 56/77 (72%)
Frame = +1
Query: 19 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 198
TVKDV VK A+HLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 199 YIRSPVGVKTVTKIFGG 249
Y+R +GV +I+GG
Sbjct: 66 YLRGGLGVGAFRRIYGG 82
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = +3
Query: 249 AQRNGVTPSHFCRASGSIARKALQSLEALKLVEQVQDGGR 368
++RNG P HFC++SG IAR LQ LE + +VE GGR
Sbjct: 83 SKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGR 122
>At4g16095.1 68417.m02440 disease resistance protein-related
contains weak similarity to rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631
Length = 187
Score = 31.5 bits (68), Expect = 0.33
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 363 HRPELAQQASMPPTIAKLCVQYCLM 289
H P L Q PP + +C++YC M
Sbjct: 86 HMPRLPDQHRFPPNLTNICLRYCCM 110
>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
kinase, putative
Length = 666
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 64 AHLKKTGKVKVPEHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 210
+H + V P D + T F+ ++ ++ WF C+A++ H+ + S
Sbjct: 15 SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64
>At2g33670.1 68415.m04126 seven transmembrane MLO family protein /
MLO-like protein 5 (MLO5) identical to MLO-like protein
5 (AtMlo5) [Arabidopsis thaliana] SWISS-PROT:O22815;
similar to MLO protein SWISS-PROT:P93766,
NCBI_gi:1877221 [Hordeum vulgare][Barley]
Length = 501
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 380 HKVDETFTESLPKFL*RAKQQAKQQVIVL*F 472
HK+ E FTE K L A Q+ K +++VL F
Sbjct: 44 HKIGEVFTERRKKALYEALQKIKNELMVLGF 74
>At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 518
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 384 LCGEECDHRPELAQQASMPPTIAKLCVQYC 295
LCG + PEL+ A+ P + KLC++ C
Sbjct: 369 LCGCDTFGDPELSCIAAKCPALRKLCIKNC 398
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 28 DVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 144
+VE D+ V A K+T + + E VKT F+ELA
Sbjct: 30 NVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68
>At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,
putative similar to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 615
Score = 26.6 bits (56), Expect = 9.3
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +1
Query: 19 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 195
T+KD EQ IV L +VPE++ LV E P+D W + +C+A++ H
Sbjct: 433 TLKDTEQRGIVDRGWGGLGNLA-TEVPENVFLV------EDCPHD--WLFPQCSAVVHH 482
>At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,
putative similar to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 615
Score = 26.6 bits (56), Expect = 9.3
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +1
Query: 19 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 195
T+KD EQ IV L +VPE++ LV E P+D W + +C+A++ H
Sbjct: 433 TLKDTEQRGIVDRGWGGLGNLA-TEVPENVFLV------EDCPHD--WLFPQCSAVVHH 482
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,146,064
Number of Sequences: 28952
Number of extensions: 196853
Number of successful extensions: 473
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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