Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30607
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.8  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   7.1  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 98  LFCLKLRCYHFYPNHEIRARVRDDSVK 18
           L+C+K  C        I ARV+  S+K
Sbjct: 60  LYCMKCECVPLQKKRRIVARVQCRSIK 86



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 236 TFYKKNLNFN*YI 198
           TF+KKNL ++ YI
Sbjct: 173 TFHKKNLYYSFYI 185


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 379 IAIQKCSRGTSIKGNEYYLKVCTTTI 302
           I  Q C   T   G+E Y +V   ++
Sbjct: 205 ITSQSCENATLYSGDEMYFRVAFPSV 230


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,542
Number of Sequences: 336
Number of extensions: 3278
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)