Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30607
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    35   0.013
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    30   0.27 
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    30   0.36 
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    30   0.36 
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    28   1.4  
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2...    27   1.9  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   1.9  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   5.8  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   7.7  

>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 11  WFPSP---NHHEHVHESHGWDRSDNNEASSKKVETIKEAPKHVAPKAPE 148
           W+P P   +H EH    H W+ S ++++S  +    K+ PK    K P+
Sbjct: 46  WYPPPPPRHHKEHKKSHHHWEYSSDDDSSDDEESCEKKKPKCCEKKKPK 94


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 26  NHHEHVHESHGWDRSDNNEASSKKVETIKE-APKHVAPKAP 145
           NH  H H+ H  D S N+ + + +++ I+E    H A + P
Sbjct: 26  NHDHHGHDHHSHDSSSNSSSEAARLQFIQEHGHSHDAMETP 66


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 26  NHHEHVHESHGWDRSDNNEASSKKVETIKEAPKH 127
           N H   HE++G   S+NN A S   ++ K  PK+
Sbjct: 49  NSHSLKHETNGASSSNNNVAKSSSHDSFKAKPKN 82


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 17/56 (30%), Positives = 22/56 (39%)
 Frame = +2

Query: 26  NHHEHVHESHGWDRSDNNEASSKKVETIKEAPKHVAPKAPEKSTWQFPK*TMNCRD 193
           +HH H H SH  D S   E     V +  E  +   P   EK   + P  + N  D
Sbjct: 303 HHHHHHHHSHDDDPSSPAEKKQNHVPSPSEKIQDHVPSPSEKKQDRVPSPSNNKED 358


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 8   EWFPSPNHHEHVHESHGWDRSDNNEASSKKVETIKEAPKHVAPKAPEKST 157
           E  PS    + V  +     S     S KK  T+KE PK ++ K   K+T
Sbjct: 282 ESLPSQKKQKKVEVAKESKDSKQQNVSDKKQVTVKEVPKKLSVKNAAKTT 331


>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 341 RKRILPKSLHYYNRSFSFTDTL*MNSSILHCYCG 240
           + RIL K ++Y N  F F D +  N  +  CY G
Sbjct: 123 KSRILSKRVNYTNPFFGFYDLI-KNEGLRGCYAG 155


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 11  WF--PSPNHHEHVHESHGWDRSDNNEASSKK 97
           W+  P P    H  E HG DR + N ++S++
Sbjct: 486 WYNSPYPKSSHHFDERHGGDRHEKNLSNSRR 516


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 62  DRSDNNEASSKKVETIKEAPKHVAPKAPEKST 157
           + S+ ++ASS + E    APK++ P +P KST
Sbjct: 66  ENSNTSKASSSEDEI---APKYLYPSSPSKST 94


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 218 NFFYRKCFRNSSEECLNSFTVY 283
           NF  +KCF  S+E  L SF+ +
Sbjct: 306 NFLIQKCFEYSTEAQLQSFSYF 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,719
Number of Sequences: 5004
Number of extensions: 51918
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)