Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30607
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811           31   0.84 
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087...    29   2.6  
01_05_0490 + 22672241-22674679                                         29   2.6  
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928...    29   4.5  
01_05_0246 + 19880364-19880565,19880721-19880801,19880891-198810...    28   7.9  

>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
          Length = 359

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 26  NHHEHVHESHGWDRSD 73
           +HHEH HE+H WD  +
Sbjct: 308 HHHEHEHENHQWDEEE 323


>04_04_1229 -
           31906854-31907300,31907986-31908181,31908631-31908756,
           31909962-31910329,31910680-31910835,31910968-31911168,
           31911230-31911375,31911439-31911865,31912527-31912627,
           31913197-31913254
          Length = 741

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = +2

Query: 368 LNSYAIDSFTFFVQKHSLLFVR--QLMILCLDLSRCSIFD--LVTVFEADLYVYFKLNIK 535
           + SYAI      +  HS + V+  +L +        ++ D   V V +A +     L + 
Sbjct: 121 MESYAISKIDHIINNHSGIGVKVFKLQLFACPNIDAAVLDKWFVHVIKAGIKE-LSLEMS 179

Query: 536 LCRKKTEYAF-CTPLML 583
           LC+K+TEY F C+ L +
Sbjct: 180 LCKKRTEYNFPCSILSM 196


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 26  NHHEHVHESHGWDRSDNNEASSKKVETIKEA-PKHVAPKAP 145
           NHH H H S G   S +++AS+    T++   P    P+ P
Sbjct: 567 NHHHHHHLSDGHYSSPSSDASASPDSTVRTTNPAPAPPRRP 607


>04_04_0752 -
           27791126-27791167,27791792-27791863,27792771-27792855,
           27792971-27793236,27794117-27794301,27794925-27795018,
           27795193-27795284,27795401-27795539,27796101-27796385
          Length = 419

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 107 IKEAPKHVAPKAPEKSTWQFPK*TMNCRDVG 199
           I +A  HVA   PEKS W+  K  + CR  G
Sbjct: 74  ICKAADHVAKVCPEKSLWEKNKICLLCRQRG 104


>01_05_0246 +
           19880364-19880565,19880721-19880801,19880891-19881054,
           19881784-19881835,19882110-19882462
          Length = 283

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 513 TYKSASNTVTKSKILHLDKSKHNIIN*RTNSKECFCTKKVKES 385
           T  S      K K+ H   S     N RT S+ CFCTK ++ S
Sbjct: 72  TITSPIQCCIKGKLKHDGTSTSASNNRRTISEMCFCTKDIRLS 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,487,128
Number of Sequences: 37544
Number of extensions: 273181
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)