Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30607
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49058| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.070
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_5771| Best HMM Match : Kelch_1 (HMM E-Value=0)                      29   3.5  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  28   8.0  

>SB_49058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
 Frame = +2

Query: 389 SFTFFVQKHSLLFVRQLMILCLDLSRCSIFDLVTVFEADLY--VYFKLNIKLCRKKTEYA 562
           S+T+ VQ + +L+++  ++LC  L+RCS     T ++  LY  +Y +  + LC   T  +
Sbjct: 157 SYTYKVQLYYVLYLQGAVVLCPILTRCSCTTSYT-YKVQLYYVMYLQGAVVLCPILTRCS 215

Query: 563 FCTPLMLYVLLFYL 604
             T     V L+Y+
Sbjct: 216 CTTSYTYKVQLYYV 229



 Score = 32.7 bits (71), Expect = 0.28
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
 Frame = +2

Query: 389 SFTFFVQKHSLLFVRQLMILCLDLSRCSIFDLVTVFEADLY--VYFKLNIKLCRKKTEYA 562
           S+T+ VQ + +L+++  ++LC  L+RCS   +   ++  LY  +Y +  + LC   T  +
Sbjct: 2   SYTYKVQLYYVLYLQGAVVLCHILTRCSC-TMSYTYKVQLYYVLYLQGAVVLCPILTRCS 60

Query: 563 FCTPLMLY-VLLFYL 604
            CT    Y V L+Y+
Sbjct: 61  -CTMSYTYKVQLYYV 74



 Score = 31.1 bits (67), Expect = 0.86
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +2

Query: 389 SFTFFVQKHSLLFVRQLMILCLDLSRCSIFDLVTVFEADLYVYFKLNIKLCRKKTEYAFC 568
           S+T+ VQ + +L+++  ++LC  L+RCS     T      YV +     + R       C
Sbjct: 64  SYTYKVQLYYVLYLQGAVVLCPILTRCSCTMSYTYKVQLYYVLYLQGAVVLRPILTRCSC 123

Query: 569 TPLMLY-VLLFYL 604
           T    Y V L+Y+
Sbjct: 124 TTSYTYKVQLYYV 136



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +2

Query: 389 SFTFFVQKHSLLFVRQLMILCLDLSRCSIFDLVTVFEADLYVYFKLNIKLCRKKTEYAFC 568
           S+T+ VQ + +L+++  ++LC  L+RCS     T      YV +     + R       C
Sbjct: 219 SYTYKVQLYYVLYLQGTVVLCPILTRCSCTMSYTYKVQLYYVLYLQGAVVLRPILTRCSC 278

Query: 569 TPLMLYVLLFY 601
           T    Y +  Y
Sbjct: 279 TTSYTYKVQLY 289


>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2309

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 59   WDRSDNNEASSKKVETIKEAPKHVAPKAPEKS 154
            WD  D N+ASSK+V T +++  + + K  ++S
Sbjct: 1460 WDLRDENQASSKEVRTSRKSANNSSQKKMDRS 1491


>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 207 IKVQIFFIESASAIAVKNA*IHLQCISKRKGTIVVVQTFR*YSF 338
           I + +  +     I V  + +H +C S RKG  VV+Q F+ + F
Sbjct: 120 ITITVAAMHYGKHITVTVSAMHYECFSIRKGIFVVLQAFKEWKF 163


>SB_5771| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 595

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 140 APEKSTWQFPK*TMNCRDVGCI 205
           +PE+  WQF     NCRD  C+
Sbjct: 398 SPERDEWQFVSQMNNCRDGACV 419


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 33  TNTCT-NLMVGIEVITTKLQAKKSKRLKRHPNM*HRKRQKSLPGN 164
           T T T N+M G+ VIT   + K +KR K H      K+ K +  N
Sbjct: 189 TKTKTINIMPGVVVITASQRIKNTKRHKSHRYSYKPKKDKGVKPN 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,009,416
Number of Sequences: 59808
Number of extensions: 361007
Number of successful extensions: 899
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)