Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30606
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    74   3e-14
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    73   5e-14
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    70   4e-13
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce...    27   4.1  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    26   5.4  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   7.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.5  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    25   9.5  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   9.5  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 35/59 (59%), Positives = 40/59 (67%)
 Frame = +2

Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
           AE Y  EYR  ER++I L R+AR  GNYYVP E KL FVIRIRGIN + PK+ K    L
Sbjct: 56  AESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114



 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 27/51 (52%), Positives = 41/51 (80%)
 Frame = +3

Query: 510 YIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 662
           Y+ +G PNLK+VREL+YKRGF K++ QRI ++ N+I+E  L K++I+ +ED
Sbjct: 141 YVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIED 191



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 21/34 (61%), Positives = 27/34 (79%)
 Frame = +1

Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
           + RK++QL RL QINNGVFV+ NKAT  ML++ E
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVE 139



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +2

Query: 662 LIHEIFTVGEKFKYASNFLWAPSNLNQSNLGG 757
           LIHEI+TVG  FK A+NF+W P  L+ S LGG
Sbjct: 192 LIHEIYTVGPNFKQAANFIW-PFQLS-SPLGG 221


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 34/59 (57%), Positives = 41/59 (69%)
 Frame = +2

Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
           AE Y  EYR  ER++I LAR+AR  GNY+VP E KL FV+RIRGIN + PK+ K    L
Sbjct: 55  AEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113



 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 28/51 (54%), Positives = 41/51 (80%)
 Frame = +3

Query: 510 YIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 662
           Y+ +G PN K+VREL+YKRGF K++ QRIP++ N+I+E  L K++I+ VED
Sbjct: 140 YVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVED 190



 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +1

Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
           + RK++QL RL QINNG+FV+ NKA   ML++ E
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVE 138



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 24/47 (51%), Positives = 30/47 (63%)
 Frame = +2

Query: 662 LIHEIFTVGEKFKYASNFLWAPSNLNQSNLGGLAKKAHSINVRPGGD 802
           LIHEI+TVG  FK A+NFLW P  L+ S LGG  ++     +  GGD
Sbjct: 191 LIHEIYTVGPNFKQAANFLW-PFKLS-SPLGGWRERKFKHFIE-GGD 234


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 27/51 (52%), Positives = 42/51 (82%)
 Frame = +3

Query: 510 YIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 662
           Y+ +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED
Sbjct: 139 YVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIED 189



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 28/59 (47%), Positives = 38/59 (64%)
 Frame = +2

Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
           AE ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK  K    L
Sbjct: 54  AETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 22/34 (64%), Positives = 26/34 (76%)
 Frame = +1

Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
           ++RKVL+L RL +INN VFVR NKA   MLRI E
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVE 137



 Score = 31.9 bits (69), Expect = 0.11
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 662 LIHEIFTVGEKFKYASNFLWAPSNLNQSNLGGLAKKAHSIN 784
           +IHEI+ VG  FK  + FLW P  L       + KK    N
Sbjct: 190 IIHEIYNVGSHFKEVTKFLW-PFTLTPVKHSLMEKKVKHFN 229


>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 90

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 206 AKEAFFCHQEEEGNLQGAEQYVKEYRIKERDEIRLARQARNRGN 337
           AKE FF HQ E   L+  ++ +K +R +E DE+      + + N
Sbjct: 47  AKEDFFVHQHEIEQLRKLKESLKLHR-EELDELESRVDKKMKSN 89


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +2

Query: 233 EEEGNLQGAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKS 412
           E + NL+     V+EY    +DEI     + N  N     E  + + +    + Q+S + 
Sbjct: 479 EIKSNLEAKSNDVEEYDAFYKDEINCEVLSWNEQNPKASEERVVGYSLPSVNLQQISNQQ 538

Query: 413 VKFCN 427
           +KF +
Sbjct: 539 LKFAS 543


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 765  LAKPPKLDWFKFEGAHRKLLAYLNFS 688
            LA      W+  +G HRK ++ LNFS
Sbjct: 1692 LATIEHAQWWWHQGQHRKAISELNFS 1717


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 715  EITRVLELFSNSEDLMDESSTQIMLCLWSLFSTMLLEVIGI 593
            E+ ++  LF NSED+M +  +  ++ L+ L S    E++ +
Sbjct: 1776 EMLKMCSLFGNSEDVMIKQLSIYVMSLFILRSQFPYELVNV 1816


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 355
           A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 310 ATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 800 LPPVGH*WNGPSWPNHPSW 744
           LP  GH W  P+   HP W
Sbjct: 475 LPEEGHNWKVPADKTHPLW 493


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 259 SPLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPL 104
           S LK +   L +E  + + + NL+V+    +L      + T G FL SS P+
Sbjct: 237 SHLKKAFTKLFSEPTMVNKSINLIVQARQQILSTAYLTALTRGDFLSSSRPI 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,274,126
Number of Sequences: 5004
Number of extensions: 67957
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)