Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30606
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    83   2e-16
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    77   1e-14
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    62   5e-10
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208...    29   5.7  
02_03_0221 - 16554910-16555560                                         29   5.7  
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268...    28   9.9  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 33/51 (64%), Positives = 45/51 (88%)
 Frame = +3

Query: 510 YIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 662
           Y+A+GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+ED
Sbjct: 136 YVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIED 186



 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 29/59 (49%), Positives = 42/59 (71%)
 Frame = +2

Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
           A+QY +EY  +E++ ++L R+AR +G +YV  EAKL FV+RIRGIN + PK+ K    L
Sbjct: 51  AKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLL 109



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = +1

Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
           + RK+LQL RLRQI NGVF+++NKAT+NMLR  E
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVE 134



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 25/47 (53%), Positives = 31/47 (65%)
 Frame = +2

Query: 662 LIHEIFTVGEKFKYASNFLWAPSNLNQSNLGGLAKKAHSINVRPGGD 802
           L+HEI TVG  FK A+NFLW P  L ++ LGGL KK +  +   GGD
Sbjct: 187 LVHEIMTVGPHFKEANNFLW-PFKL-KAPLGGLKKKRN--HYVEGGD 229


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 34/57 (59%), Positives = 46/57 (80%), Gaps = 6/57 (10%)
 Frame = +3

Query: 510 YIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR------LHKHNIICVED 662
           Y+A+GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+       L KH+IIC+ED
Sbjct: 135 YVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIED 191



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 28/59 (47%), Positives = 41/59 (69%)
 Frame = +2

Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
           A+QY +EY  +E++ ++L R+AR +G +YV  E KL FV+RIRGIN + PK+ K    L
Sbjct: 50  AKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLL 108



 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = +1

Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
           + RK+LQL RLRQI NGVF+++NKAT+NMLR  E
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVE 133



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 25/47 (53%), Positives = 31/47 (65%)
 Frame = +2

Query: 662 LIHEIFTVGEKFKYASNFLWAPSNLNQSNLGGLAKKAHSINVRPGGD 802
           L+HEI TVG  FK A+NFLW P  L ++ LGGL KK +  +   GGD
Sbjct: 192 LVHEIMTVGPHFKEANNFLW-PFKL-KAPLGGLKKKRN--HYVEGGD 234


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 24/51 (47%), Positives = 39/51 (76%)
 Frame = +3

Query: 510 YIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 662
           +I +G+PNLK+V++L+YK+G   L  +  P+TSN ++EK L ++ IIC+ED
Sbjct: 138 FITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLED 188



 Score = 31.9 bits (69), Expect = 0.61
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 8/168 (4%)
 Frame = +2

Query: 239 EGNLQGAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPK 409
           +G ++  E +V+E+R KE D +R+  + + R     P E   +KL F IRI G   + P 
Sbjct: 46  KGAIKRPEDFVREFRNKELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPH 103

Query: 410 SVKFCNCLDCAK*-TMVCLYV*IRLL*ICYVSPSLHCLGIPQLKECP*VSIQT---WIRQ 577
             +    L   +  T V L      +    V       G P LK    +  +    ++ +
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDK 163

Query: 578 AEWTTYTNHFQQHC*EEAP*TQHYLC*-GLIHEIFTVGEKFKYASNFL 718
             +   +N       E+A      +C   L+HEI +VG  F+ ASNFL
Sbjct: 164 EPFPLTSNDLI----EKALGEYGIICLEDLVHEIASVGPHFREASNFL 207


>03_01_0270 -
           2085461-2086205,2086260-2086339,2086598-2086690,
           2086774-2086881,2087012-2087101,2087234-2087275,
           2087516-2087587,2090848-2090985,2091074-2092624
          Length = 972

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 167 EERGSSH*EITGYAKEAFFCHQEEEGNLQGAEQYVKEYRIKERDEIRLARQARNRG 334
           + RG +H EIT    +A     ++    +  ++ V   RIKER E R   +  +RG
Sbjct: 193 KSRGGNHGEITARDGDATIQESQKRPGKRWIDEPVGNDRIKERSERRTDGKRNSRG 248


>02_03_0221 - 16554910-16555560
          Length = 216

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 271 DVLFSPLKISLFFLMAEERLFSVTCNLLVRRASL--LLRCLSTDSGTAGSFLLSSFPLT 101
           DVL   L  ++F  +A      V C   V   +   LL  +   +G AGSFL + FP T
Sbjct: 146 DVLHGALSFAVFLAVAMVDRNVVACFYPVESPATRQLLAAVPMAAGAAGSFLFAMFPST 204


>01_06_0457 -
           29524544-29525962,29526518-29526606,29526841-29526892,
           29527573-29527677,29528181-29528208,29528279-29528343,
           29528808-29528880,29528932-29529113
          Length = 670

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 509 LHCLGIPQLKECP*VSIQTWIRQAEW 586
           LHC G+PQ+K        +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,628,633
Number of Sequences: 37544
Number of extensions: 439939
Number of successful extensions: 996
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)