Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30606
         (802 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    81   9e-16
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    31   0.96 
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      29   3.9  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    29   3.9  
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    29   5.1  
AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical ...    29   5.1  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 81.0 bits (191), Expect = 9e-16
 Identities = 32/51 (62%), Positives = 43/51 (84%)
 Frame = +3

Query: 510 YIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 662
           Y+AWGYPN K++ +L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+ED
Sbjct: 135 YVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLED 185



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 30/54 (55%), Positives = 43/54 (79%)
 Frame = +2

Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 418
           AE+YV+EYR  +++ +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK  K
Sbjct: 50  AEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = +1

Query: 412 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
           RK LQ+ RLRQINNGVFV+LNKAT+ +LRI E
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIE 133



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 23/47 (48%), Positives = 25/47 (53%)
 Frame = +2

Query: 662 LIHEIFTVGEKFKYASNFLWAPSNLNQSNLGGLAKKAHSINVRPGGD 802
           L HEI TVG  FK A+NFLW P  LN    G   K  H +    GGD
Sbjct: 186 LAHEIATVGPHFKEATNFLW-PFKLNNPTGGWTKKTNHFVE---GGD 228


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +3

Query: 231 KKKREIFKGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 410
           KK+R++ +     SR  ASR  +K     K    A +T P +PN +  S S  S ++  +
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80

Query: 411 P*SSATV*TAP 443
             S   + + P
Sbjct: 81  RSSQVKIRSVP 91


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 340  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 474
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 340  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 474
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 340  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 474
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -1

Query: 652 QIMLCLWSL-FSTMLLEVIGIRCPLSLANPRLYTNSRTLFKLGYPQAM*ARRYVAYSQ*P 476
           +I++CL +L F T+  E   +   L +    +YTNS+         A  A  +++ +   
Sbjct: 417 RIVICLVALSFDTLSPEARVVIVGLGMLGNEMYTNSKASCLFEQQMAAGAAWFLSEANVE 476

Query: 475 YSDVQTHHCLFGAV*TVAELYG 410
           Y  ++ H  LF  +  + EL+G
Sbjct: 477 YLSIKAHEVLF-HLPEINELFG 497


>AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical
           protein F36F12.1 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 331 WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 453
           +Q++R  G Q+GI    PW  P F++V R  L+  R  ++ N
Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,156,724
Number of Sequences: 27780
Number of extensions: 378904
Number of successful extensions: 929
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)