BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30606 (802 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 81 9e-16 U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical pr... 31 0.96 Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 29 3.9 AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 29 3.9 AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 29 3.9 AF098986-5|AAC67426.1| 671|Caenorhabditis elegans Hypothetical ... 29 5.1 AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical ... 29 5.1 >AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal protein, large subunitprotein 7 protein. Length = 244 Score = 81.0 bits (191), Expect = 9e-16 Identities = 32/51 (62%), Positives = 43/51 (84%) Frame = +3 Query: 510 YIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 662 Y+AWGYPN K++ +L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+ED Sbjct: 135 YVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLED 185 Score = 69.3 bits (162), Expect = 3e-12 Identities = 30/54 (55%), Positives = 43/54 (79%) Frame = +2 Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 418 AE+YV+EYR +++ +RL R+A +G++YVP E K+AFV+RIRGINQ+ PK K Sbjct: 50 AEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103 Score = 52.4 bits (120), Expect = 4e-07 Identities = 24/32 (75%), Positives = 28/32 (87%) Frame = +1 Query: 412 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507 RK LQ+ RLRQINNGVFV+LNKAT+ +LRI E Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIE 133 Score = 39.1 bits (87), Expect = 0.004 Identities = 23/47 (48%), Positives = 25/47 (53%) Frame = +2 Query: 662 LIHEIFTVGEKFKYASNFLWAPSNLNQSNLGGLAKKAHSINVRPGGD 802 L HEI TVG FK A+NFLW P LN G K H + GGD Sbjct: 186 LAHEIATVGPHFKEATNFLW-PFKLNNPTGGWTKKTNHFVE---GGD 228 >U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical protein W06A11.4 protein. Length = 347 Score = 31.1 bits (67), Expect = 0.96 Identities = 20/71 (28%), Positives = 33/71 (46%) Frame = +3 Query: 231 KKKREIFKGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 410 KK+R++ + SR ASR +K K A +T P +PN + S S S ++ + Sbjct: 21 KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80 Query: 411 P*SSATV*TAP 443 S + + P Sbjct: 81 RSSQVKIRSVP 91 >Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein C05C12.3 protein. Length = 1694 Score = 29.1 bits (62), Expect = 3.9 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +1 Query: 340 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 474 L R Q+ PW P FT + V+ LF+L + ++ +F R N Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390 >AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. Length = 1694 Score = 29.1 bits (62), Expect = 3.9 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +1 Query: 340 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 474 L R Q+ PW P FT + V+ LF+L + ++ +F R N Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390 >AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP homologous cationchannel protein. Length = 1681 Score = 29.1 bits (62), Expect = 3.9 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +1 Query: 340 LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 474 L R Q+ PW P FT + V+ LF+L + ++ +F R N Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377 >AF098986-5|AAC67426.1| 671|Caenorhabditis elegans Hypothetical protein C36C9.4 protein. Length = 671 Score = 28.7 bits (61), Expect = 5.1 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Frame = -1 Query: 652 QIMLCLWSL-FSTMLLEVIGIRCPLSLANPRLYTNSRTLFKLGYPQAM*ARRYVAYSQ*P 476 +I++CL +L F T+ E + L + +YTNS+ A A +++ + Sbjct: 417 RIVICLVALSFDTLSPEARVVIVGLGMLGNEMYTNSKASCLFEQQMAAGAAWFLSEANVE 476 Query: 475 YSDVQTHHCLFGAV*TVAELYG 410 Y ++ H LF + + EL+G Sbjct: 477 YLSIKAHEVLF-HLPEINELFG 497 >AF067940-8|AAC19200.1| 518|Caenorhabditis elegans Hypothetical protein F36F12.1 protein. Length = 518 Score = 28.7 bits (61), Expect = 5.1 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = +1 Query: 331 WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 453 +Q++R G Q+GI PW P F++V R L+ R ++ N Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,156,724 Number of Sequences: 27780 Number of extensions: 378904 Number of successful extensions: 929 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 881 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 929 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1956310428 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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