Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30606
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    28   0.12 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.82 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.8  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 630 ASSQQCCWK*LVYVVHSAWRIHVCILTHGHSLSWG 526
           A++   CW  + Y+V  AW I    ++    L WG
Sbjct: 65  AAAVMSCWMNVYYIVILAWAIFYFFMSMRSELPWG 99


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 203 YAKEAFFCHQEEEGNLQGAEQYVKEYRIKERDEIR 307
           YA + FF    ++  L+  E    EYR+ E D ++
Sbjct: 82  YAADIFFAQTWKDNRLRLPENMTSEYRLLEVDWLK 116


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 690  SPTVKISWMSP 658
            S T++ISWMSP
Sbjct: 1095 SQTIRISWMSP 1105


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -2

Query: 612 CWK*LVYVVHSAWRIHVCILTHGHSLSW 529
           CW  + Y++  AW +   +++    L W
Sbjct: 109 CWTNIYYIIILAWALFYLLVSLRIDLPW 136


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -2

Query: 612 CWK*LVYVVHSAWRIHVCILTHGHSLSW 529
           CW  + Y++  AW +   +++    L W
Sbjct: 162 CWTNIYYIIILAWALFYLLVSLRIDLPW 189


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 377 RIRGINQVSPKSVKFCNCLDC 439
           +  GI+  +P     C+CLDC
Sbjct: 312 KYEGISS-TPSQASSCSCLDC 331


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 613 LLEVIGIRCPLSLAN 569
           ++E+IGI C L LAN
Sbjct: 206 IVELIGIICALCLAN 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,061
Number of Sequences: 438
Number of extensions: 5076
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)