Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30606
(802 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 81 6e-16
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 81 1e-15
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 81 1e-15
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 79 3e-15
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 79 3e-15
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 79 3e-15
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 62 6e-10
At5g52200.1 68418.m06479 expressed protein 30 2.1
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 29 2.7
At2g44735.1 68415.m05566 expressed protein ; expression supporte... 29 4.7
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 81.4 bits (192), Expect = 6e-16
Identities = 68/184 (36%), Positives = 90/184 (48%), Gaps = 2/184 (1%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLD 436
AEQY KEY KE++ I L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 48 AEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLR 107
Query: 437 CAK-*TMVCLYV*IRLL*ICYVSPSLHCLGIPQLKECP*VSIQTWIRQAEWTTYTNHFQQ 613
+ V L V + + G P LK + + +
Sbjct: 108 LRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIA-LTDN 166
Query: 614 HC*EEAP*TQHYLC-*GLIHEIFTVGEKFKYASNFLWAPSNLNQSNLGGLAKKAHSINVR 790
E+A +C LIHEI TVG FK A+NFLW P L ++ LGGL KK + +
Sbjct: 167 SIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLW-PFQL-KAPLGGLKKKRN--HYV 222
Query: 791 PGGD 802
GGD
Sbjct: 223 EGGD 226
Score = 78.6 bits (185), Expect = 4e-15
Identities = 33/51 (64%), Positives = 42/51 (82%)
Frame = +3
Query: 510 YIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 662
Y+ +G+PNLKSV+EL+YKRG+ KL+ QRI +T NSIVE+ L KH IIC ED
Sbjct: 133 YVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTED 183
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +1
Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
+ +K+LQL RLRQI NGVF+++NKAT+NMLR E
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVE 131
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 80.6 bits (190), Expect = 1e-15
Identities = 34/51 (66%), Positives = 43/51 (84%)
Frame = +3
Query: 510 YIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 662
Y+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVED
Sbjct: 138 YVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVED 188
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/59 (54%), Positives = 41/59 (69%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
AEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 53 AEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 111
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +1
Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
+ +K+LQL RLRQI NGVF+++NKATVNMLR E
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVE 136
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +2
Query: 662 LIHEIFTVGEKFKYASNFLWAPSNLNQSNLGGLAKKAHSINVRPGGD 802
LIHEI TVG FK A+NFLW P L ++ LGGL KK + + GGD
Sbjct: 189 LIHEIMTVGPHFKEANNFLW-PFQL-KAPLGGLKKKRN--HYVEGGD 231
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 80.6 bits (190), Expect = 1e-15
Identities = 34/51 (66%), Positives = 43/51 (84%)
Frame = +3
Query: 510 YIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 662
Y+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH IICVED
Sbjct: 133 YVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVED 183
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/59 (54%), Positives = 41/59 (69%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
AEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 48 AEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +1
Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
+ +K+LQL RLRQI NGVF+++NKATVNMLR E
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVE 131
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +2
Query: 662 LIHEIFTVGEKFKYASNFLWAPSNLNQSNLGGLAKKAHSINVRPGGD 802
LIHEI TVG FK A+NFLW P L ++ LGGL KK + + GGD
Sbjct: 184 LIHEIMTVGPHFKEANNFLW-PFQL-KAPLGGLKKKRN--HYVEGGD 226
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 79.4 bits (187), Expect = 3e-15
Identities = 34/51 (66%), Positives = 42/51 (82%)
Frame = +3
Query: 510 YIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 662
Y+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVED
Sbjct: 135 YVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVED 185
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/59 (54%), Positives = 43/59 (72%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
A+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 50 AKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +1
Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
+ +K+LQL RLRQI NGVF+++NKAT+NMLR E
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVE 133
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +2
Query: 662 LIHEIFTVGEKFKYASNFLWAPSNLNQSNLGGLAKKAHSINVRPGGD 802
LIHEI TVG FK A+NFLW P L ++ LGG+ KK + + GGD
Sbjct: 186 LIHEIMTVGPHFKEANNFLW-PFQL-KAPLGGMKKKRN--HYVEGGD 228
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 79.4 bits (187), Expect = 3e-15
Identities = 34/51 (66%), Positives = 42/51 (82%)
Frame = +3
Query: 510 YIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 662
Y+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVED
Sbjct: 135 YVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVED 185
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/59 (54%), Positives = 43/59 (72%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
A+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 50 AKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +1
Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
+ +K+LQL RLRQI NGVF+++NKAT+NMLR E
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVE 133
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +2
Query: 662 LIHEIFTVGEKFKYASNFLWAPSNLNQSNLGGLAKKAHSINVRPGGD 802
LIHEI TVG FK A+NFLW P L ++ LGG+ KK + + GGD
Sbjct: 186 LIHEIMTVGPHFKEANNFLW-PFQL-KAPLGGMKKKRN--HYVEGGD 228
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 79.4 bits (187), Expect = 3e-15
Identities = 34/51 (66%), Positives = 42/51 (82%)
Frame = +3
Query: 510 YIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 662
Y+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH IICVED
Sbjct: 135 YVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVED 185
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/59 (54%), Positives = 43/59 (72%)
Frame = +2
Query: 257 AEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 433
A+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 50 AKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +1
Query: 406 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAE 507
+ +K+LQL RLRQI NGVF+++NKAT+NMLR E
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVE 133
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +2
Query: 662 LIHEIFTVGEKFKYASNFLWAPSNLNQSNLGGLAKKAHSINVRPGGD 802
LIHEI TVG FK A+NFLW P L ++ LGG+ KK + + GGD
Sbjct: 186 LIHEIMTVGPHFKEANNFLW-PFQL-KAPLGGMKKKRN--HYVEGGD 228
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 61.7 bits (143), Expect = 6e-10
Identities = 23/51 (45%), Positives = 38/51 (74%)
Frame = +3
Query: 510 YIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 662
Y+ +GYPN KSV++L+YK+G + G +P+T N+I+E+ L +H I+ +ED
Sbjct: 137 YVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIED 187
Score = 44.4 bits (100), Expect = 9e-05
Identities = 21/68 (30%), Positives = 41/68 (60%)
Frame = +2
Query: 230 QEEEGNLQGAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 409
+++ +++ E +V E+R KE D IR+ ++ + + P ++ L F+IRI+G N + PK
Sbjct: 43 KKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPK 102
Query: 410 SVKFCNCL 433
+ + N L
Sbjct: 103 TKRILNNL 110
>At5g52200.1 68418.m06479 expressed protein
Length = 191
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 209 KEAFFCHQEEEGNLQGAEQYVKEYRIKERDEIRLARQARNRGNYY 343
+EA Q+EEG+ G + +R DE R ++ R+ G++Y
Sbjct: 98 EEADPMDQDEEGSGSGKNERFNAHRKAHYDEFRKVKELRSSGSFY 142
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 246 IFKGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 410
I G + T R+ +R + SD K+ V+ T GK HLS E VS F RS
Sbjct: 404 IRSGASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRRS 455
>At2g44735.1 68415.m05566 expressed protein ; expression supported
by MPSS
Length = 248
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 500 SPSLHCLGIPQLKECP*VSIQTW-IRQAEWTTY 595
SPS + QL+ C V I TW + EWTT+
Sbjct: 138 SPSCMVISYTQLRSCGSVLIDTWRPGETEWTTH 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,304,761
Number of Sequences: 28952
Number of extensions: 358966
Number of successful extensions: 900
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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