Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30605
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ...    74   2e-14
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    26   5.0  

>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 35/52 (67%), Positives = 40/52 (76%)
 Frame = +2

Query: 509 APRSGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIGTAYL 664
           APRSGLA K+ ID GAGVID DYRG+V V+LFN+SD DF +K GDRI    L
Sbjct: 60  APRSGLASKHSIDTGAGVIDADYRGHVRVLLFNYSDVDFPIKVGDRIAQLIL 111



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 29/53 (54%), Positives = 35/53 (66%)
 Frame = +3

Query: 351 RLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRV 509
           +LSE A  P +GS  +AG DL +A +  VP RGK LV TDL I +P G YGRV
Sbjct: 7   KLSEKATIPTKGSANSAGYDLYAAAECIVPRRGKVLVDTDLAIAVPEGTYGRV 59


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
            pyrophosphate synthase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = +3

Query: 423  YDYTVPARGKELVKTDLQIELPPGCYGRVHLDLA*L*RISLMLVPVLLMRTIEVMLELFF 602
            ++ T P+  KE     ++I L PGCY +  LD+    +  + + P    R++   L+L  
Sbjct: 843  FERTNPSGNKEF---SVRITLSPGCYAQCPLDMNLDAKHCISVSP---RRSLTRHLDLQQ 896

Query: 603  LITRTQTL 626
             IT+T+ L
Sbjct: 897  FITKTEDL 904


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,739
Number of Sequences: 5004
Number of extensions: 51332
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)