Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30605
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0620 - 26196597-26196841,26196929-26197020,26197118-26197296     87   2e-17
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727     29   5.2  

>03_05_0620 - 26196597-26196841,26196929-26197020,26197118-26197296
          Length = 171

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 40/47 (85%), Positives = 43/47 (91%)
 Frame = +2

Query: 509 APRSGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRI 649
           APRSGLALK+ IDVGAGVID DYRG VGV+LFNHSDTDF+VK GDRI
Sbjct: 91  APRSGLALKHSIDVGAGVIDADYRGPVGVILFNHSDTDFAVKPGDRI 137



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 36/62 (58%), Positives = 42/62 (67%)
 Frame = +3

Query: 324 KIQPILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYG 503
           K+ P+LK  +LSENA  P RGS  AAG DL SA +  VPARGK +V TDL I +P G Y 
Sbjct: 29  KVAPLLKVKKLSENAVLPSRGSALAAGYDLSSAAEVVVPARGKAMVPTDLSIAIPEGTYA 88

Query: 504 RV 509
           RV
Sbjct: 89  RV 90


>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
          Length = 706

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 655 SLFVRRSTILVLQEVAKFVCNSKGVMGGI 741
           ++ + RST+ VL  ++ F  N+ G+MGG+
Sbjct: 91  NISLSRSTLRVLNGISTFCYNASGLMGGV 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,360,776
Number of Sequences: 37544
Number of extensions: 293103
Number of successful extensions: 455
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)