Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30605
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35498| Best HMM Match : dUTPase (HMM E-Value=6.1)                   75   5e-14
SB_20580| Best HMM Match : dUTPase (HMM E-Value=0.0013)                65   7e-11
SB_16604| Best HMM Match : dUTPase (HMM E-Value=0.078)                 65   7e-11
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_44519| Best HMM Match : Ribonuc_red_lgC (HMM E-Value=0)             28   7.0  

>SB_35498| Best HMM Match : dUTPase (HMM E-Value=6.1)
          Length = 90

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 32/62 (51%), Positives = 44/62 (70%)
 Frame = +3

Query: 324 KIQPILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYG 503
           + + +L F +L++    P RGS  AAG DL SAYD ++PA+GK LVKTD+ + +P GCYG
Sbjct: 20  RAETVLYFKKLTKLGLPPTRGSSHAAGYDLYSAYDVSIPAQGKALVKTDIAVAIPDGCYG 79

Query: 504 RV 509
           RV
Sbjct: 80  RV 81


>SB_20580| Best HMM Match : dUTPase (HMM E-Value=0.0013)
          Length = 103

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +2

Query: 518 SGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRI 649
           S LA K+ IDVGAGVID DYRGNVGVVLFN   + + VK+GDRI
Sbjct: 2   SSLAWKHQIDVGAGVIDRDYRGNVGVVLFNLGSSAYEVKQGDRI 45


>SB_16604| Best HMM Match : dUTPase (HMM E-Value=0.078)
          Length = 62

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +2

Query: 518 SGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRI 649
           S LA K+ IDVGAGVID DYRGNVGVVLFN   + + VK+GDRI
Sbjct: 2   SSLAWKHQIDVGAGVIDRDYRGNVGVVLFNLGSSAYEVKQGDRI 45


>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -3

Query: 748 SPKSHPSPLWSYRQI*QLPVTPG**IFSQISCANSVSFFHTKVCVRVIKKNNSNITSIVL 569
           SPK  PS    ++   Q PV  G  + +Q   ++  +      C+  I++   N+ SI L
Sbjct: 194 SPKREPSNFRDFQLAAQAPVF-GQELATQFRPSSKPAPVCVMKCIEAIEQRGMNVDSIYL 252

Query: 568 INNTGTN 548
           I++ G+N
Sbjct: 253 ISSQGSN 259


>SB_44519| Best HMM Match : Ribonuc_red_lgC (HMM E-Value=0)
          Length = 783

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 633 KKETELAQLICEKIYYPGVTGSC 701
           +K  EL +LI E IYY  VT SC
Sbjct: 508 QKAQELNKLIFETIYYGAVTASC 530


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,666,731
Number of Sequences: 59808
Number of extensions: 363139
Number of successful extensions: 661
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)