Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30605
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate nucleotido...    81   8e-16

>At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate
           nucleotidohydrolase family contains Pfam profile:
           PF00692 deoxyuridine 5'-triphosphate nucleotidohydrolase
          Length = 166

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 38/47 (80%), Positives = 40/47 (85%)
 Frame = +2

Query: 509 APRSGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRI 649
           APRSGLA K+ IDVGAGVID DYRG VGV+LFNHSD DF VK GDRI
Sbjct: 86  APRSGLAWKHSIDVGAGVIDADYRGPVGVILFNHSDADFEVKFGDRI 132



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 32/59 (54%), Positives = 37/59 (62%)
 Frame = +3

Query: 333 PILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPGCYGRV 509
           P  K  +LSE A  P RGS  +AG DL SA D  VPARGK L+ TDL I +P G Y R+
Sbjct: 27  PFFKVKKLSEKAVIPTRGSPLSAGYDLSSAVDSKVPARGKALIPTDLSIAVPEGTYARI 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,878,334
Number of Sequences: 28952
Number of extensions: 255499
Number of successful extensions: 463
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)