Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30604
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    29   0.60 
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    29   0.79 
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   2.4  
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    27   2.4  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    27   4.2  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      26   5.6  
SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.6  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   7.4  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   7.4  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    26   7.4  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   7.4  

>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +1

Query: 355 SSASYQPSYQISTQNYQPATNSHGDASSINVGAGYSI-----GGIKPSFSYDGQ 501
           S + YQ   Q+ +Q+ Q   N  G+ +S  +G  Y        GIKP F +DG+
Sbjct: 36  SMSLYQFLIQVRSQDGQQLMNEQGETTSHLMGMFYRTLRIVDNGIKPCFVFDGK 89


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
 Frame = +2

Query: 182 ADDVKDKREAPASYVHGHSSSSYALLDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQ 361
           A+   D+ +  A+ V        A+  ++RRA H +  L R +  L +  + +H +    
Sbjct: 294 ANAANDEDQFMANPVLPEDVLKEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETP 353

Query: 362 QAISHHIKSVHKTTNQPRIRMAMPAL--LMSELDIVLVE 472
            +   H+K +     +P +R     L  L+  L I LVE
Sbjct: 354 TSFLQHVKDITFIDKKP-LRFCAERLTSLVRALQISLVE 391


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 317  LDSLHRTMHFLDTLQQAISHHIKSVH 394
            L  LHR    LD L+Q I + I+SVH
Sbjct: 1101 LTHLHRAYKGLDPLKQIIGYPIRSVH 1126


>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 212 PASYVHGHSSSSYALLDSLRRAIHLLD 292
           P + V    S+S++L+ SL  +IHLLD
Sbjct: 182 PITSVKTSKSASFSLISSLNSSIHLLD 208


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 279 YIFWTVSIELYIFWTVSIELCIFWTLFSKLSAIISNQYTKLPTSHEF 419
           +++  V+++  I   +   +C++W +FSKL  II N+  +    H F
Sbjct: 13  FLYLMVNVQCRIKEIMYWNICLYWDVFSKL--IIYNKVCQFGRIHIF 57


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 526 LKSILLMVMPLFNLAPITLQPTSRRRRSSIW 618
           +KS +L+V+ L  L+PI +  T      S+W
Sbjct: 144 VKSCILIVLTLAGLSPILMSLTKSTSPDSVW 174


>SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 179 RADDVKDKREAPASYVHGHSSSSYALLDSLRRAIHLLDSL-HRAIHLLD 322
           R D  K   +AP + +HG  +S   +   LR   + L  L  + IHL D
Sbjct: 4   RNDRRKSASKAPNAIIHGRVASKKTIKKQLRNGKYSLKRLAEKGIHLDD 52


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = +3

Query: 300 IELY--IFWTVSIELCIFWTLFSKLSAIISNQYTKLPTSHEFAW 425
           I+LY  + W  S   CI +  F + S +    YT     + F W
Sbjct: 73  IQLYEPLLWLSSFPFCILYVGFGENSVLYHEMYTMEMALYCFRW 116


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 382 DMMADSLLKSVQKMHSSMETVQKMYSSMETVQ 287
           DM+ + LLK   K HS+ E ++++   + ++Q
Sbjct: 397 DMLRNKLLKEEHKHHSTSEKLEELSKYVASIQ 428


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +2

Query: 227 HGHSSSSYALLDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAISHHIKSVHK 397
           H HS  +  L +  +  IHL D L R  ++L  L R +         +  H+ S  K
Sbjct: 303 HHHSRKNSGLNEEYKITIHLADILQRQKYIL-KLCRALMVYGAPSHRLEEHMASAAK 358


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +1

Query: 337 YAFSGHSSASYQPSYQISTQNYQPATNSHGDASSINVGAGYSIGGIKPSFSYDGQGSV 510
           YA S  +++S   SYQ  + +  P + +   A+S+N  +    G  K  +  D   SV
Sbjct: 102 YASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKDHWKPDSDVSV 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,502,134
Number of Sequences: 5004
Number of extensions: 75680
Number of successful extensions: 272
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)