Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30604
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0958 + 22881718-22881999,22882114-22883880                       31   1.1  
01_06_1480 - 37660591-37660720,37660899-37660930,37661061-376611...    30   2.5  
04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347...    29   4.4  
11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558     28   7.7  

>07_03_0958 + 22881718-22881999,22882114-22883880
          Length = 682

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +1

Query: 421 HGDASSINVGAGYSIGGIKPSFSYDGQGSVGFSTHLKSILLMVMPLFNLAPITLQPTSRR 600
           HGDAS        ++G + P ++  G+ S     +   I+L+ M      P+ LQ  S R
Sbjct: 479 HGDASQTTAVLAGTMGYMDPEYAASGKASTASDVYSFGIVLLEM-CCGRRPVLLQEQSIR 537

Query: 601 RRSSIW 618
            R   W
Sbjct: 538 SRLLEW 543


>01_06_1480 - 37660591-37660720,37660899-37660930,37661061-37661155,
            37661460-37661527,37661608-37661694,37662884-37662912,
            37663019-37663138,37663854-37663905,37663986-37664050,
            37664174-37664536,37664637-37664711,37664803-37664940,
            37665025-37665181,37665471-37665478,37665576-37665710,
            37665965-37666082,37666791-37666915,37667571-37667717,
            37668297-37668380,37668671-37668800,37669196-37669347,
            37669678-37669857,37670660-37670731,37671104-37671295,
            37671366-37671411,37671498-37671647,37671725-37671882,
            37671995-37672101,37672191-37672407,37672484-37672696,
            37672852-37672972,37673072-37673253,37673475-37673672,
            37674770-37674967
          Length = 1447

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 227  HGHSSSSYALLDSLRRAIHLLDSLHRAIHLLD-SLHRTMHFLDTLQQAISHHIKSVHKTT 403
            HGH++SS  +L  + RAI +   L  A  L +  +   +H L  +   I   +    K +
Sbjct: 994  HGHNTSSVPILMGIFRAIQMAGDLAEAEDLAECGITHKLHILSRIGLLIVKELDKHCKMS 1053

Query: 404  NQPR 415
            + PR
Sbjct: 1054 DSPR 1057


>04_04_1094 -
           30832987-30833316,30833530-30834273,30834484-30834742,
           30834821-30835041,30835127-30835375,30835460-30835595,
           30835864-30836207,30836589-30836758,30837080-30837185,
           30837267-30837330,30838462-30838616
          Length = 925

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 317 LDSLHRTMHFLDTLQQAISHHIKSVHKTTNQPRIRMAMPALLMSELDIVLVE-*NQALVT 493
           LD L   +   D +  A+S+ I   H+  N    R    ALL  ++   LVE  NQA + 
Sbjct: 129 LDKLESAIVRCDNIHGALSYCINLSHQYVNHREYRFEDDALLAYQIAFDLVENENQAFLL 188

Query: 494 MVKDLWAS 517
            V++  AS
Sbjct: 189 NVRNRLAS 196


>11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558
          Length = 852

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 738 SAFPPPKCGNSCNRLLGWLQRKEPPELRL 652
           SA PP    N+ N L+ WL   +P  LR+
Sbjct: 179 SAEPPADLKNTVNELVRWLMEDQPAGLRI 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,771,494
Number of Sequences: 37544
Number of extensions: 547119
Number of successful extensions: 1525
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)