Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30604
(815 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38138| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_9039| Best HMM Match : M (HMM E-Value=0.00046) 33 0.21
SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8) 31 1.1
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_53200| Best HMM Match : Apolipoprotein (HMM E-Value=0.0069) 30 2.6
SB_55209| Best HMM Match : WRKY (HMM E-Value=1.1) 29 3.4
SB_16243| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023) 29 4.5
SB_42442| Best HMM Match : Keratin_B2 (HMM E-Value=0.88) 29 4.5
SB_17118| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_8345| Best HMM Match : SNF7 (HMM E-Value=1.6) 29 4.5
SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81) 29 6.0
SB_1786| Best HMM Match : HC2 (HMM E-Value=0.12) 29 6.0
SB_41527| Best HMM Match : zf-CCHC (HMM E-Value=0.00044) 28 7.9
SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 28 7.9
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08) 28 7.9
>SB_38138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 568
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 TVSVELYIFWTVSIELYIFWTVSIELCIFWTL-FSKLSAIISNQYTKLPTSHEFAWR 428
TVS++ Y +WTVSI+ Y +WTVSI+ +WT+ + +S Q+ S ++A+R
Sbjct: 154 TVSIQ-YAYWTVSIQ-YAYWTVSIQYA-YWTVSIQYVYRTVSIQFAYRTVSIQYAYR 207
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +3
Query: 258 WTVSVELYIFWTVSIELYIFWTVSIELCIFWTLFSKLSAIISNQYTKLPTSHEFAWR 428
WTVS++ Y +WTVSI+ Y++ TVSI+ +S QY S +FA++
Sbjct: 171 WTVSIQ-YAYWTVSIQ-YVYRTVSIQFAYRTVSIQYAYRTVSIQYAYQTVSIQFAYQ 225
Score = 35.9 bits (79), Expect = 0.039
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 TVSVELYIFWTVSIELYIFWTVSIELCIFWTLFSKLSA-IISNQYTKLPTSHEFAWR 428
TVS++ + + TVSI+ Y +WTVSI+ +WT+ + + +S QY S +FA+R
Sbjct: 145 TVSIQ-FAYQTVSIQ-YAYWTVSIQYA-YWTVSIQYAYWTVSIQYVYRTVSIQFAYR 198
Score = 33.1 bits (72), Expect = 0.28
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +3
Query: 261 TVSVELYIFWTVSIELYIFWTVSIELCIFWTLFSKLS-AIISNQYTKLPTSHEFAWR 428
TVS++ Y++ TVSI+ Y + TVSI+ +WT+ + + +S QY S ++A+R
Sbjct: 388 TVSIQ-YVYQTVSIQ-YAYQTVSIQYA-YWTVSIQYAYQTVSIQYAYQTVSIQYAYR 441
Score = 31.9 bits (69), Expect = 0.64
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +3
Query: 261 TVSVELYIFWTVSIELYIFWTVSIELCIFWTLFSKLSAIISNQYTKLPTSHEFAWR 428
TVS++ Y + TVSI+ Y +WTVSI+ +S QY S ++A++
Sbjct: 316 TVSIQ-YAYRTVSIQ-YAYWTVSIQFAYQTVSIQYAYQTVSIQYAYQAVSIQYAYQ 369
>SB_9039| Best HMM Match : M (HMM E-Value=0.00046)
Length = 716
Score = 33.5 bits (73), Expect = 0.21
Identities = 7/33 (21%), Positives = 23/33 (69%)
Frame = +3
Query: 258 WTVSVELYIFWTVSIELYIFWTVSIELCIFWTL 356
W + V++++ WT +++Y++ +++++ I W +
Sbjct: 371 WVIIVDIHLEWTFIVDIYLYCVINVDIHIEWAI 403
Score = 33.5 bits (73), Expect = 0.21
Identities = 7/38 (18%), Positives = 25/38 (65%)
Frame = +3
Query: 258 WTVSVELYIFWTVSIELYIFWTVSIELCIFWTLFSKLS 371
WT V++Y++ ++++++I W + + + + W + + ++
Sbjct: 381 WTFIVDIYLYCVINVDIHIEWAIIVGIYLEWAIIADIN 418
Score = 30.3 bits (65), Expect = 2.0
Identities = 7/32 (21%), Positives = 19/32 (59%)
Frame = +3
Query: 258 WTVSVELYIFWTVSIELYIFWTVSIELCIFWT 353
W + V +Y+ W + ++ + W + +++ + WT
Sbjct: 401 WAIIVGIYLEWAIIADINLEWVIIVDIHLEWT 432
Score = 30.3 bits (65), Expect = 2.0
Identities = 6/32 (18%), Positives = 20/32 (62%)
Frame = +3
Query: 258 WTVSVELYIFWTVSIELYIFWTVSIELCIFWT 353
W + ++ + W + +++++ WT +++ + WT
Sbjct: 411 WAIIADINLEWVIIVDIHLEWTFIVDIHLEWT 442
Score = 29.1 bits (62), Expect = 4.5
Identities = 7/36 (19%), Positives = 23/36 (63%)
Frame = +3
Query: 249 MHCWTVSVELYIFWTVSIELYIFWTVSIELCIFWTL 356
++C ++V+++I W + + +Y+ W + ++ + W +
Sbjct: 389 LYC-VINVDIHIEWAIIVGIYLEWAIIADINLEWVI 423
Score = 29.1 bits (62), Expect = 4.5
Identities = 6/27 (22%), Positives = 19/27 (70%)
Frame = +3
Query: 258 WTVSVELYIFWTVSIELYIFWTVSIEL 338
W + V++++ WT +++++ WT +++
Sbjct: 421 WVIIVDIHLEWTFIVDIHLEWTFIVDI 447
>SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)
Length = 627
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +2
Query: 257 LDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAIS 373
LD+L RA+ LD+L R LD+L R + LDTL + ++
Sbjct: 154 LDTLPRAVTRLDTLLRVGTRLDTLPRVVTRLDTLPRVVT 192
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 257 LDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAIS 373
LD+L R LD+L RA+ LD+L R LDTL + ++
Sbjct: 144 LDTLPRVGTRLDTLPRAVTRLDTLLRVGTRLDTLPRVVT 182
>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2051
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 272 RAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAISH 376
RA H+LD R +H+LD R +H LD L + H
Sbjct: 2002 RAPHVLDHSLRFLHVLDHSLRVLHVLDQLFCRVLH 2036
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 254 LLDSLRRAIHLLDSLHRAIHLLDSLH-RTMHFLD 352
+LD R +H+LD R +H+LD L R +H LD
Sbjct: 2006 VLDHSLRFLHVLDHSLRVLHVLDQLFCRVLHVLD 2039
>SB_53200| Best HMM Match : Apolipoprotein (HMM E-Value=0.0069)
Length = 246
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Frame = +2
Query: 137 TLISLSAPWSVLAKRADDVKDKREAPASYVHGHSSSSYALLD-SLRRAIHLLD-SLHRAI 310
+L +L L + D+ + + P + S LD S ++ LD SL ++
Sbjct: 32 SLETLDESLETLDESLDESLETLDEPLETLDESLDESLETLDESPDESLETLDESLDESL 91
Query: 311 HLLDSLHRTMH-FLDTLQQAISHHIKSVHKTTNQ 409
LD T+H L+TLQ+++ ++S+H++ ++
Sbjct: 92 ETLDESLETLHESLETLQESLEKLLESLHESLDE 125
>SB_55209| Best HMM Match : WRKY (HMM E-Value=1.1)
Length = 386
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 270 VELYIFWTVSIELYIFWTVSIELCIF-WTLFSKLSAIISNQYTKLPTSHEF 419
+EL++ + IEL++F IEL +F L K+S N KL EF
Sbjct: 224 IELHLVVRIGIELHLFVRRDIELHLFLLQLARKISGEKDNDKAKLKVQEEF 274
>SB_16243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 392 HKTTNQPRIRMAMPALLMSELDIVLVE*NQA 484
H T Q ++ + P + +S+ D++L+E N A
Sbjct: 10 HNTAQQQKVSILKPPIYLSQYDVILIEHNTA 40
>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
Length = 1016
Score = 29.1 bits (62), Expect = 4.5
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Frame = +2
Query: 224 VHGHSSSSYALLDSLRRA---IHLLDSLHRAIHLLDSLHRTMHFLDTLQQAISHHIKSVH 394
VH S+ Y D + A +HL D +HL +H T ++ + VH
Sbjct: 586 VHLTSNDVYLTSDGVHLASDDVHLTDD---DVHLTGYVHLTSDGVNLTSNGVHLTSDDVH 642
Query: 395 KTTNQPRIRMAMPALL-MSELDIVLVE*NQALVTMVKDL 508
T++ + +PAL+ L + L + +Q L T + L
Sbjct: 643 LTSHDAHLTKCIPALIEKMRLQLALQDWDQTLETAQRAL 681
>SB_42442| Best HMM Match : Keratin_B2 (HMM E-Value=0.88)
Length = 274
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 738 SAFPPPKCGNSCNRLLGWLQRKEPPELRLWLQLIIIWEISPDTRPPA 598
S +PP G+S + Q PP L+ +W+ISP T PP+
Sbjct: 168 STYPPSCSGDSLLDVWDVSQSTYPPSCS-GDSLLDVWDISPSTYPPS 213
>SB_17118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 29.1 bits (62), Expect = 4.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 548 SCHYSTWLLSHCNPLHG 598
SC +S WL SH NP+ G
Sbjct: 6 SCAFSVWLFSHLNPVPG 22
>SB_8345| Best HMM Match : SNF7 (HMM E-Value=1.6)
Length = 216
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = -2
Query: 355 SVQKMHSSMETVQKMYSSMETVQKMYSSTETVQQ 254
++Q+M + T+Q+M + T+Q+M +T T+Q+
Sbjct: 7 TLQRMTDNTSTLQRMTDNTSTLQRMTDNTSTLQR 40
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = -2
Query: 355 SVQKMHSSMETVQKMYSSMETVQKMYSSTETVQQ 254
++Q+M + T+Q+M + T+Q+M +T T+Q+
Sbjct: 17 TLQRMTDNTSTLQRMTDNTSTLQRMTDNTSTLQR 50
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = -2
Query: 355 SVQKMHSSMETVQKMYSSMETVQKMYSSTETVQQ 254
++Q+M + T+Q+M + T+Q+M +T T+Q+
Sbjct: 27 TLQRMTDNTSTLQRMTDNTSTLQRMTGNTSTLQR 60
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = -2
Query: 355 SVQKMHSSMETVQKMYSSMETVQKMYSSTETVQQ 254
++Q+M + T+Q+M + T+Q+M +T T+Q+
Sbjct: 37 TLQRMTDNTSTLQRMTGNTSTLQRMTDNTSTLQR 70
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = -2
Query: 355 SVQKMHSSMETVQKMYSSMETVQKMYSSTETVQQ 254
++Q+M + T+Q+M + T+Q+M +T T+Q+
Sbjct: 47 TLQRMTGNTSTLQRMTDNTSTLQRMTDNTSTLQR 80
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = -2
Query: 355 SVQKMHSSMETVQKMYSSMETVQKMYSSTETVQQ 254
++Q+M + T+Q+M + T+Q+M +T T+Q+
Sbjct: 177 TLQRMTDNTSTLQRMNDNTSTLQRMTDNTSTLQR 210
>SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)
Length = 468
Score = 28.7 bits (61), Expect = 6.0
Identities = 8/31 (25%), Positives = 16/31 (51%)
Frame = +3
Query: 258 WTVSVELYIFWTVSIELYIFWTVSIELCIFW 350
W V+V + W V++ + W V++ + W
Sbjct: 143 WVVTVSFSVTWVVTVSFNVTWVVTVCSSVTW 173
Score = 28.7 bits (61), Expect = 6.0
Identities = 8/31 (25%), Positives = 16/31 (51%)
Frame = +3
Query: 258 WTVSVELYIFWTVSIELYIFWTVSIELCIFW 350
W V+V + W V++ + W V++ + W
Sbjct: 333 WVVTVSFSVTWVVTVSFNVTWVVTVCSSVTW 363
>SB_1786| Best HMM Match : HC2 (HMM E-Value=0.12)
Length = 379
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +3
Query: 261 TVSVELYIFWTVSIELYIFWTVSIELCIFWTLFSKLSAI--ISNQYTKLPT 407
TV+ E+Y TV+ E+Y TV+ E+ T+ ++++A+ ++N+ L T
Sbjct: 226 TVANEMYALRTVANEMYALRTVANEMYALRTVANEMNALRTVANEMNALRT 276
>SB_41527| Best HMM Match : zf-CCHC (HMM E-Value=0.00044)
Length = 358
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 702 NRLLGWLQRKEPPELRLWLQLIIIWEISPDT 610
N+L+GW QRKE L+ +L I+ + +T
Sbjct: 108 NKLMGWNQRKEKNATELYQELAILAQAPGET 138
>SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1391
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 358 KSVQKMHSSMETVQKMYSSMETVQKMYSSTE 266
+++ + +S ET+ ++YS ET+ ++YS E
Sbjct: 213 ETMNEFYSRRETMNELYSRQETMNELYSRRE 243
>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1937
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 300 IELYIFWTVSIELCIFWTLF--SKLSAIISNQYTKLPTSHEFAW 425
+E YI+WT +E CI + +KL +I + K P W
Sbjct: 1480 VEEYIYWTEIMEGCIMRAKYDGTKLEVVIPRKQVKSPEGIAVDW 1523
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 334 NYAFSGHSSASYQPSYQISTQNYQPATNSHGDASSINVGAGYSIGGIKPSFS 489
+Y+ + S S PSY ++ +Y P + S+ A N A S PS++
Sbjct: 695 SYSPASPSYTSASPSYSPASPSYSPTSPSYSPAIPSNSPASPSYSPASPSYT 746
>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
Length = 1213
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 729 PPPKCGNSCNRLLGWLQRKEPPELRL 652
PP +CG+ C+RL +R PP LRL
Sbjct: 1088 PPQECGHVCSRL---TKRCRPPALRL 1110
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,253,644
Number of Sequences: 59808
Number of extensions: 581288
Number of successful extensions: 1647
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -