Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30604
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    30   2.3  
AF099918-2|AAN63400.1|  219|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC006832-2|AAO38580.1|  366|Caenorhabditis elegans Hypothetical ...    29   4.0  
AC006832-1|AAO38581.1|  376|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z68118-5|CAA92185.1|  245|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z83116-4|CAB05562.1|  287|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr...    28   9.2  
U23484-9|AAC46771.1|  304|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 340 AFSGHSSAS-YQPSYQISTQNYQPATNSHGDASSINVGAGYSIGGIKPSFSYDG 498
           ++SG SS+S Y  S   S  +Y P+ +S+ D +S +  + YS     PS+S  G
Sbjct: 236 SYSGSSSSSSYSSSDSSSYSSYTPSISSNSDYTSYS-PSYYSYSSYSPSYSSYG 288


>AF099918-2|AAN63400.1|  219|Caenorhabditis elegans Hypothetical
           protein H05C05.1b protein.
          Length = 219

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 349 GHSSASYQPSYQISTQNYQPATNSHGDASSINVGAGYSIGGIKPSFSY-DGQGSVGFSTH 525
           GH   +++   Q S+Q YQ    S   A S + G G   GG KPS S    +G  G   H
Sbjct: 108 GHQK-NHRKYDQSSSQRYQQQRRSSMSAGSESGGRGGGGGGQKPSSSRGSARGMRGGGGH 166

Query: 526 LKS 534
            KS
Sbjct: 167 RKS 169


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 349 GHSSASYQPSYQISTQNYQPATNSHGDASSINVGAGYSIGGIKPSFSY-DGQGSVGFSTH 525
           GH   +++   Q S+Q YQ    S   A S + G G   GG KPS S    +G  G   H
Sbjct: 612 GHQK-NHRKYDQSSSQRYQQQRRSSMSAGSESGGRGGGGGGQKPSSSRGSARGMRGGGGH 670

Query: 526 LKS 534
            KS
Sbjct: 671 RKS 673


>AC006832-2|AAO38580.1|  366|Caenorhabditis elegans Hypothetical
           protein ZK355.2a protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 246 AMHCWTVSVELYIFWTVSIELYIFWTVSIELCI 344
           A+HC+  S E  I W   + L++ +T +I L I
Sbjct: 95  AVHCFAGSFEWLIGWNTQLALFLSYTKAISLLI 127


>AC006832-1|AAO38581.1|  376|Caenorhabditis elegans Hypothetical
           protein ZK355.2b protein.
          Length = 376

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 246 AMHCWTVSVELYIFWTVSIELYIFWTVSIELCI 344
           A+HC+  S E  I W   + L++ +T +I L I
Sbjct: 105 AVHCFAGSFEWLIGWNTQLALFLSYTKAISLLI 137


>Z68118-5|CAA92185.1|  245|Caenorhabditis elegans Hypothetical
           protein R01E6.5 protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +1

Query: 334 NYAFSGHSSASYQPSYQISTQNYQPATNSHGDASS 438
           NY   GH S SYQPSY      Y     SH   S+
Sbjct: 193 NYG-QGHDSESYQPSYYQPKPKYYGGHQSHYQPSA 226


>Z83116-4|CAB05562.1|  287|Caenorhabditis elegans Hypothetical
           protein M01B2.4 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 279 YIFWTVSIELYIFWTVSIELCIFWTLFSKLSA--IISN 386
           +I+W    +L  F+T+S+ +CI + L   LSA  II N
Sbjct: 44  FIYWKFGADL--FYTLSLSICISYYLLMSLSANFIIKN 79


>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical protein
            C03D6.4 protein.
          Length = 1390

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = +1

Query: 343  FSGHSSASYQPSYQISTQNYQPATNSHGDASSINVGAGYSIGGIKPSFSYDGQGSVGFST 522
            F G S A+  P         QPA  S+   S+ +V   ++ G    S    G GS G   
Sbjct: 1111 FGGGSKAASSPFGSFGQAGCQPAKTSNPATSTASVTFSFNTGATSASAKPAGFGSFGAGA 1170

Query: 523  HLK 531
              K
Sbjct: 1171 SAK 1173


>U23484-9|AAC46771.1|  304|Caenorhabditis elegans Hypothetical
           protein EEED8.11 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 318 WTVSIELCIFWTLFSKLSAIISNQYTKLPTSHEF 419
           WT  IE CI +T++  L+    N Y  L  +++F
Sbjct: 240 WTYDIEQCIQFTVYPALTGPGDNPYNMLNRNNKF 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,372,401
Number of Sequences: 27780
Number of extensions: 430963
Number of successful extensions: 1165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)