Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30604
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   7.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 657 RLWLQLIIIWEIS 619
           R+WL ++++W IS
Sbjct: 302 RVWLTILLVWAIS 314


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 4   SQPTDRSREISSQVVYQLSYSGLVSSTRRE 93
           S+PTD++  +  Q VY++   G V   R E
Sbjct: 239 SRPTDKALRLPLQDVYKIGGIGTVPVGRVE 268


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 275 AIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAISH 376
           A+  L+ L+   + LDS + +M     + Q I H
Sbjct: 390 ALRALNDLYNVKNTLDSYNGSMEINQNIAQNIDH 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,809
Number of Sequences: 438
Number of extensions: 5183
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)