Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30604
         (815 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    30   2.1  
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated...    29   2.8  
At4g36630.2 68417.m05198 expressed protein                             28   6.4  
At4g36630.1 68417.m05199 expressed protein                             28   6.4  
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    28   6.4  
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ...    28   6.4  
At5g41390.1 68418.m05029 hypothetical protein contains 1 predict...    28   8.5  

>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 145 YQSDECNREFHFRCLVSIRVLLMKLNHYTRVDKQLEKIFPSSDRS 11
           Y  D+C    H RCL+   + + K  H    +K+   I P++ RS
Sbjct: 574 YACDDCCTTLHVRCLLGEDMYMSKPGHTIMNNKREVHILPNNTRS 618


>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
           protein, Candida albicans, PIR2:S58135
          Length = 343

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +1

Query: 346 SGHSSASYQPSYQISTQNYQPATNSHGDASSINVGAGYSIGGIKPSFSYDGQGSVGFSTH 525
           +GHSS S   S   ST N   +T S+  + + +   GYS G    S +     S   STH
Sbjct: 102 NGHSSGSNHSSATGSTHNGHTSTGSNHSSGNGSRHNGYSSGSNHSSSTGSNHSSSTGSTH 161


>At4g36630.2 68417.m05198 expressed protein
          Length = 950

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 647 SHSLNSGGSFLCNHPNKRLQEFPHLGGGKADKVKSYPQPQLYFMGKTCRPLLILG 811
           ++S +    FLC    KR+  F H GGG   +V+ Y  P        C   + LG
Sbjct: 114 AYSWDDRRGFLCFSRQKRVCVFKHDGGGGFVEVRDYGVPDTVKSISWCGENICLG 168


>At4g36630.1 68417.m05199 expressed protein
          Length = 519

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 647 SHSLNSGGSFLCNHPNKRLQEFPHLGGGKADKVKSYPQPQLYFMGKTCRPLLILG 811
           ++S +    FLC    KR+  F H GGG   +V+ Y  P        C   + LG
Sbjct: 114 AYSWDDRRGFLCFSRQKRVCVFKHDGGGGFVEVRDYGVPDTVKSISWCGENICLG 168


>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 334  NYAFSGHSSASYQPSYQISTQNYQPAT-NSHGDASSINVGAGYS--IGGIKPS 483
            NY+ +  S +   PSY  S+  Y P++  S G +   +  AGYS  + G  PS
Sbjct: 1759 NYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGYSPTLPGYSPS 1811


>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
           (ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
           type
          Length = 178

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 623 ISQIMINWSHSLNSGGSFLCNHPNKRLQEFPHLGGGKADKVK 748
           + QI +N     ++   F C   NKR   F  LGG +A   K
Sbjct: 30  VKQIGLNQHTESHTSNQFECKTCNKRFSSFQALGGHRASHKK 71


>At5g41390.1 68418.m05029 hypothetical protein contains 1 predicted
           transmembrane domain;
          Length = 297

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +2

Query: 275 AIHL---LDSLHRAIHLLDSLHRTMHFLDTLQQAISHHIKSVHKTTNQPRIRMAMPALLM 445
           AIHL   +  LHRAI  L ++HR +H      Q I    K+V++  N  RI++ + +L+ 
Sbjct: 202 AIHLPVTVTLLHRAIRQLRAIHRDIH----QHQDILQSNKNVNQNLNL-RIKVVISSLVC 256

Query: 446 S 448
           S
Sbjct: 257 S 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,604,238
Number of Sequences: 28952
Number of extensions: 414637
Number of successful extensions: 1257
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)