Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30602
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    28   1.8  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    27   2.4  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   9.5  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   9.5  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    25   9.5  

>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 599 WSRAEPYSLPMVRKSLFQRQQQKTDAKNILDSIFIRFHPNSRKLLIPFKNGSPK 760
           W   +P  L    +     + ++  A   LDS+ +   PNSR  L+ F NG P+
Sbjct: 428 WRTHKPLILRATPQWFISLENERKTAIKALDSVKM-IPPNSRARLLGFLNGRPE 480


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 273 RSTLSLLRFDRKSWRC*VVIAKSVSDSYGDSVRCIRESNRP*SGEG 136
           RST+   R    +WRC V IA SV+ S+    R +    +P +  G
Sbjct: 42  RSTIDNSRLFYDAWRCMVCIAPSVTASWISLYRQLPPEKQPAASVG 87


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +2

Query: 545 TPMLNQRAPLQTNPARKVWSRAEPYSLPMVRKSLFQRQQQKTDAKNILDSIFIR-FHPNS 721
           +P+LN    LQ NP+   +++          K L+ R Q    A+N     F R   P+S
Sbjct: 649 SPILNGFLKLQDNPSSIYFAKQTDSRQSSASKLLYARLQAPEHARNFSSPPFTRPASPSS 708

Query: 722 RK 727
            K
Sbjct: 709 SK 710


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 304 NPSGSSTGKP*KRTGRTHKLTCR 372
           NP+   T KP KR  +T  LTCR
Sbjct: 18  NPNVEPTPKPTKRRTKTGCLTCR 40


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 639 NHYFNDNNKKLTRKTFSIVYL 701
           N    DN KK+T K FS+ Y+
Sbjct: 19  NILIKDNAKKITEKQFSLAYV 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,279
Number of Sequences: 5004
Number of extensions: 65149
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)