Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30602
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0863 + 7177443-7177471,7178300-7178399,7178628-7178899,717...    35   0.087
03_01_0563 + 4169144-4169516,4170362-4170648,4171339-4171576,417...    33   0.27 
07_03_0846 - 21983581-21986055                                         30   1.9  
11_06_0442 - 23622633-23623000,23623149-23623721,23624795-236253...    29   3.3  
11_02_0031 - 7559312-7559503,7559732-7559992,7561760-7562140           29   3.3  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    29   4.3  
08_01_0653 + 5633673-5634821,5635730-5635885,5635942-5636152,563...    29   5.7  
03_02_0384 - 7972067-7972162,7972776-7972985,7973083-7973286,797...    29   5.7  

>07_01_0863 +
           7177443-7177471,7178300-7178399,7178628-7178899,
           7179143-7179794,7179886-7180085,7180317-7180417,
           7180559-7181697
          Length = 830

 Score = 34.7 bits (76), Expect = 0.087
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = +2

Query: 512 MQL*ETDLILTTPMLNQRAPLQTNPARKVWSRAEPYSLPMVRKSL--FQRQQQKTDAKNI 685
           +Q+   D ILT P+ N   P + + +  +WSR E +   M R +L  F R       ++ 
Sbjct: 42  LQMARWDEILTLPVQNPPTP-EFSASDIMWSRVEGWKDSMDRLALIPFSRVNDFVRGESN 100

Query: 686 LDSIFIRFHPNSRKLLIPFKNGSPKID 766
                 RFH  +R+   P  N  PK+D
Sbjct: 101 NKECPTRFHVEARRRRPPTMNCKPKVD 127


>03_01_0563 +
           4169144-4169516,4170362-4170648,4171339-4171576,
           4172473-4172796,4172914-4172999,4173124-4173231,
           4173315-4173619,4173733-4173960,4174109-4174877
          Length = 905

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 683 ILDSIFIRFHPNSRKLLIPFKNGSPKI-DWATFNGAKGDHGV 805
           +L+ I  + HP ++K   P ++G   I DW    GAKGDH V
Sbjct: 114 VLELISTKIHPRTKK---PMQSGRVSIKDWCQKRGAKGDHVV 152


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 221 SSSPNLSPTATVILLGVSGNPIGLDPAKEGR*HSTSVDEVSNITTA 84
           S  P   PT   + +G  GN + LD +K  +  ST+V   SN T A
Sbjct: 81  SDVPVSDPTTASLSIGSDGNLVLLDQSKNRQLWSTNVSVASNSTVA 126


>11_06_0442 -
           23622633-23623000,23623149-23623721,23624795-23625335,
           23625807-23625982,23626081-23626804
          Length = 793

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -3

Query: 566 LVGLTLVSSESNLSPIAALGC----FEPSYWSVRSSMTRCSILTN 444
           L GLT +  E +LS +  L       E   WS  SS+T C+ LTN
Sbjct: 232 LPGLTSIIFEGSLSDLTYLDLGGNKLEAGDWSFMSSLTNCTQLTN 276


>11_02_0031 - 7559312-7559503,7559732-7559992,7561760-7562140
          Length = 277

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/61 (34%), Positives = 30/61 (49%)
 Frame = +1

Query: 421 PPKQTQTQFVSIEQRVIELRTDQ*LGSKQPNAAIGDRFDSDDTNVKPTSTVANKPGAESM 600
           PP+ T T  +   QRV+  R  +  G+ +P+AA G+   S D N  P   +A  P  E  
Sbjct: 29  PPRATATATLRHHQRVVGCRAAEVSGA-EPSAAAGEA--SGDGNWVPVVPLAALPRGERR 85

Query: 601 V 603
           V
Sbjct: 86  V 86


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 163 FPDTPNRITVAVG-DRFGDDDSTTPRL 240
           F D P R T+A     FG DDS+ PRL
Sbjct: 661 FSDNPRRQTIAAAASLFGADDSSNPRL 687


>08_01_0653 +
           5633673-5634821,5635730-5635885,5635942-5636152,
           5636488-5636624
          Length = 550

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 189 RSCRRQIWR*RLNNAKTSDRS-EGDLELIDRLSKLP 293
           R  +  +WR R    +TS R  +GD E  DRLS LP
Sbjct: 2   RRGKAALWRPRHGEGETSRRGGDGDGEAADRLSALP 37


>03_02_0384 -
           7972067-7972162,7972776-7972985,7973083-7973286,
           7973381-7973497,7973692-7973810,7974001-7974341,
           7974492-7974646,7974948-7975109,7975262-7975321
          Length = 487

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 614 PYSLPMVRKSLFQRQQQKTDAKNILDSIFIRFHPNSRKLLI 736
           PYS P V KS  +R+Q+  D+K        +  P+++K+++
Sbjct: 353 PYSTPHVSKSNQKRRQRGDDSKTCATPKKPKIEPDTKKIVV 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,059,061
Number of Sequences: 37544
Number of extensions: 428873
Number of successful extensions: 1079
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)