Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30602
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.8  
SB_44577| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_47841| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                28   7.7  

>SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1868

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +2

Query: 551  MLNQRAPLQTNPARKVWSRAEPYSLPMVRKSLFQRQQQKTDAKNILDSIFIRFHPNSRKL 730
            + ++ APL+    +++  +A+P+    V  S+ QRQ+         DS  +RF+ N    
Sbjct: 1154 LTDKHAPLRKRTNKQIKQQAKPWLTKAVLNSIKQRQKLFITHFLSNDSSKVRFYKNYNNK 1213

Query: 731  LIPFKNGSPKI 763
            L   K  + K+
Sbjct: 1214 LNRVKEAAKKV 1224


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = -3

Query: 332 GLPVDEPEGLLVDRQLAQSIDQL*VSFASIGSLGVVESSSPNLSPTATVILLGVSGNPIG 153
           GLP+ E      D  + +++D    S  S+G  GV      N     T  L G+ G P+G
Sbjct: 434 GLPLSENWDTTCDESIDRALDAT-ESKGSVGPGGV------NWVGMGTGGLGGIIGTPLG 486

Query: 152 LDPAKEGR 129
            +P+KE R
Sbjct: 487 WEPSKENR 494


>SB_44577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +2

Query: 551 MLNQRAPLQTNPARKVWSRAEPYSLPMV--RKSLFQRQQQKTDAKN-ILDSIFIRFHPNS 721
           +LN +AP++  P R + S  +  SLP+   ++S  +RQ      K  +L  IF    PNS
Sbjct: 87  LLNSKAPMRKAPMRALDSTPDSVSLPLTPKKRSPCKRQMAALRPKGPMLPKIFA---PNS 143

Query: 722 RK 727
            K
Sbjct: 144 EK 145


>SB_47841| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 351

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 392 SHHAQSKRCYRPSKLKR 442
           +H A+S+RC+RPS  +R
Sbjct: 52  THQARSRRCFRPSSFRR 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,656,724
Number of Sequences: 59808
Number of extensions: 506462
Number of successful extensions: 1168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)