Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30602
(805 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y14065-2|CAA74393.1| 497|Caenorhabditis elegans catalase 1 prot... 31 1.3
X82175-1|CAA57665.1| 500|Caenorhabditis elegans catalase protein. 31 1.3
AL034488-15|CAA22451.1| 500|Caenorhabditis elegans Hypothetical... 31 1.3
Y14066-1|CAA74394.1| 497|Caenorhabditis elegans catalase 2 prot... 29 3.9
U55384-1|AAC14537.1| 496|Caenorhabditis elegans cytosolic catal... 29 3.9
AL034488-11|CAD31698.1| 512|Caenorhabditis elegans Hypothetical... 29 3.9
AL034488-5|CAA22458.2| 497|Caenorhabditis elegans Hypothetical ... 29 3.9
U00064-6|AAB52703.1| 213|Caenorhabditis elegans Hypothetical pr... 29 5.1
AF106575-6|AAC78175.2| 244|Caenorhabditis elegans Hypothetical ... 29 5.1
Z92833-5|CAK12560.1| 411|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z92833-4|CAK12559.1| 442|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z92833-3|CAB07378.1| 506|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z34800-4|CAA84323.2| 441|Caenorhabditis elegans Hypothetical pr... 28 9.0
U51163-1|AAA96319.1| 506|Caenorhabditis elegans fork head/HNF-3... 28 9.0
>Y14065-2|CAA74393.1| 497|Caenorhabditis elegans catalase 1
protein.
Length = 497
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 252 EGDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPNGFID 392
EG+ +L+ + + + P F N+ + ++NPQTH++ PN D
Sbjct: 136 EGNWDLVGNNTPIFFIRDPIHFPNF--IHTQKRNPQTHLKDPNMIFD 180
>X82175-1|CAA57665.1| 500|Caenorhabditis elegans catalase protein.
Length = 500
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 252 EGDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPNGFID 392
EG+ +L+ + + + P F N+ + ++NPQTH++ PN D
Sbjct: 136 EGNWDLVGNNTPIFFIRDPIHFPNF--IHTQKRNPQTHLKDPNMIFD 180
>AL034488-15|CAA22451.1| 500|Caenorhabditis elegans Hypothetical
protein Y54G11A.5 protein.
Length = 500
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 252 EGDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPNGFID 392
EG+ +L+ + + + P F N+ + ++NPQTH++ PN D
Sbjct: 136 EGNWDLVGNNTPIFFIRDPIHFPNF--IHTQKRNPQTHLKDPNMIFD 180
>Y14066-1|CAA74394.1| 497|Caenorhabditis elegans catalase 2
protein.
Length = 497
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 252 EGDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPNGFID 392
EG+ +L+ + + + F N+ + A ++NPQTH++ PN D
Sbjct: 136 EGNWDLVGNNTPIFFIRDAIHFPNF--IHALKRNPQTHMRDPNALFD 180
>U55384-1|AAC14537.1| 496|Caenorhabditis elegans cytosolic catalase
protein.
Length = 496
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 252 EGDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPNGFID 392
EG+ +L+ + + + F N+ + A ++NPQTH++ PN D
Sbjct: 136 EGNWDLVGNNTPIFFIRDAIHFPNF--IHALKRNPQTHMRDPNALFD 180
>AL034488-11|CAD31698.1| 512|Caenorhabditis elegans Hypothetical
protein Y54G11A.13 protein.
Length = 512
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 252 EGDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPNGFID 392
EG+ +L+ + + + F N+ + A ++NPQTH++ PN D
Sbjct: 151 EGNWDLVGNNTPIFFIRDAIHFPNF--IHALKRNPQTHMRDPNALFD 195
>AL034488-5|CAA22458.2| 497|Caenorhabditis elegans Hypothetical
protein Y54G11A.6 protein.
Length = 497
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 252 EGDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPNGFID 392
EG+ +L+ + + + F N+ + A ++NPQTH++ PN D
Sbjct: 136 EGNWDLVGNNTPIFFIRDAIHFPNF--IHALKRNPQTHMRDPNALFD 180
>U00064-6|AAB52703.1| 213|Caenorhabditis elegans Hypothetical
protein ZC155.2 protein.
Length = 213
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 166 PDTPNRITVAVGD-RFGDDDSTTPRLPI 246
P+ PNR+T+ GD R DD+ T R+ +
Sbjct: 15 PNVPNRVTIPDGDLRRNSDDTATDRISL 42
>AF106575-6|AAC78175.2| 244|Caenorhabditis elegans Hypothetical
protein K04F1.1 protein.
Length = 244
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 300 CRQAACSVYRSTLSLLRFDRKSWRC*VVIAKSVSDSYGDS 181
C + SVY L+ LRF R+ R + K++ D YG S
Sbjct: 134 CTKLGASVYDCILTGLRFVRQGLRFVALFNKNIEDFYGFS 173
>Z92833-5|CAK12560.1| 411|Caenorhabditis elegans Hypothetical
protein F38A6.1c protein.
Length = 411
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 195 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 61
S+ D V+ R ++P G +L +H C G + NGCY+ R R
Sbjct: 194 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 236
>Z92833-4|CAK12559.1| 442|Caenorhabditis elegans Hypothetical
protein F38A6.1b protein.
Length = 442
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 195 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 61
S+ D V+ R ++P G +L +H C G + NGCY+ R R
Sbjct: 225 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 267
>Z92833-3|CAB07378.1| 506|Caenorhabditis elegans Hypothetical
protein F38A6.1a protein.
Length = 506
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 195 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 61
S+ D V+ R ++P G +L +H C G + NGCY+ R R
Sbjct: 289 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 331
>Z34800-4|CAA84323.2| 441|Caenorhabditis elegans Hypothetical
protein F45H7.4 protein.
Length = 441
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/68 (20%), Positives = 33/68 (48%)
Frame = +1
Query: 427 KQTQTQFVSIEQRVIELRTDQ*LGSKQPNAAIGDRFDSDDTNVKPTSTVANKPGAESMVT 606
KQ + ++ + ++ +T + + +GD ++++ PTS+V+ +PG+
Sbjct: 286 KQQTLSWDALTKNKVQKKTSE-SSDDHHSETLGDHSETEEDRSPPTSSVSQQPGSADEGV 344
Query: 607 G*TLQPSN 630
G + SN
Sbjct: 345 GLSASSSN 352
>U51163-1|AAA96319.1| 506|Caenorhabditis elegans fork
head/HNF-3-like protein protein.
Length = 506
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 195 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 61
S+ D V+ R ++P G +L +H C G + NGCY+ R R
Sbjct: 289 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,047,466
Number of Sequences: 27780
Number of extensions: 374269
Number of successful extensions: 962
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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