Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30602
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23520.1 68417.m03390 cysteine proteinase, putative contains ...    30   2.1  
At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family pr...    29   4.8  
At4g31430.2 68417.m04465 expressed protein                             28   6.3  
At4g31430.1 68417.m04464 expressed protein                             28   6.3  
At4g01550.1 68417.m00201 no apical meristem (NAM) family protein...    28   8.3  

>At4g23520.1 68417.m03390 cysteine proteinase, putative contains
           similarity to cysteine proteinase (thiol protease) RD21A
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 356

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 573 CKQTRRGKYGHGLNPTAFQWFVNHYFNDNNK 665
           C     G YG GL  TAFQ+ +N+   D+ K
Sbjct: 188 CNLVNNGCYGSGLMDTAFQFLINNNGLDSEK 218


>At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 550

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 239 SLGVVESSSPNLSPTATVILLGVSGNPIG-LDPAKEGR*HSTSVDEVSNITTAAT 78
           S G +ES  PNL+P    +L  +  N I  ++ A       T +DE S I+   T
Sbjct: 215 SSGEIESLEPNLTPEEEALLTKLKSNRISEIEEALISIRRITRIDESSRISLCTT 269


>At4g31430.2 68417.m04465 expressed protein
          Length = 574

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 505 QPNAAIGDRFDSDDTNVKPTSTVANKPGAESMVTG*TLQPS 627
           Q   A+ D  D D   ++PTST+ N   A  +  G TL P+
Sbjct: 390 QSGTAVDDFNDQDGDFIQPTSTIGNTTNA-VLALGATLDPT 429


>At4g31430.1 68417.m04464 expressed protein
          Length = 485

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 505 QPNAAIGDRFDSDDTNVKPTSTVANKPGAESMVTG*TLQPS 627
           Q   A+ D  D D   ++PTST+ N   A  +  G TL P+
Sbjct: 390 QSGTAVDDFNDQDGDFIQPTSTIGNTTNA-VLALGATLDPT 429


>At4g01550.1 68417.m00201 no apical meristem (NAM) family protein
           similar to  NAC1 (GI:7716952) {Medicago truncatula};
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 457

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 270 IDRLSKLPVDKQPFWFINWQALEAHRKNPQ 359
           ID+ S +   ++  WFI  +A+E +R NP+
Sbjct: 390 IDKESSMVKTEKKSWFITEEAMERNRNNPR 419


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,001,176
Number of Sequences: 28952
Number of extensions: 347579
Number of successful extensions: 839
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)