Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30601
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    28   1.8  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   3.1  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    27   4.1  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   5.4  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   7.1  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   9.4  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    25   9.4  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   9.4  

>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
 Frame = +3

Query: 147 NQEAPKRAREATGPAQRSRNPWRGLPHLPLRSG-DSISCEHVPIHPGMYANVETGCQAYH 323
           N + PK   +    A +S       P    RS  D+ S   VP H  +Y N+     AY+
Sbjct: 7   NADTPKNTNDVLNGAYQSATTE---PEGQYRSATDNPSLYQVPTHGSLYRNLSNSASAYY 63

Query: 324 VCHDGREGHQGASFLCTNGTLFDQAK 401
             +      + A+ L    +L ++ +
Sbjct: 64  PANGNMNSREPANELSDISSLAEKGE 89


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 435 SQAIEHYKLNADPLKNPY 488
           SQA +HYKL+ + L+N Y
Sbjct: 246 SQAAQHYKLDVNSLRNAY 263


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 616 CK*LKYKHDQITIIL*YSLKVCLFRDIVLFWLFLV 512
           C+ +  K   ITI+L + + +C+F  I+L  +FLV
Sbjct: 26  CREIDKKALLITILLTFFVSLCVFLSIILPLIFLV 60


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -3

Query: 563 PESMPLQGYCTLLVVPGG-FWFLFRHVGIFQWIS 465
           PE+  L    T+   P G FWF F   G   W+S
Sbjct: 389 PEARFLISLLTVWFFPAGLFWFAFTSDGRISWVS 422


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 423 NVDCSQAIEHYKLNADPLKNPYVPKQKPE 509
           N D   ++EH K++ D L N  + K++ E
Sbjct: 520 NTDADVSLEHAKISFDSLDNSVIVKKEEE 548


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 151  RKPLREHEKPQDLRNVPGTPGVDYPIYHSVPETRFR 258
            R+P R+   PQ   NVPGT     PI  S    R +
Sbjct: 935  RRPPRQLIPPQQSTNVPGTSKPSGPITSSTLLARLK 970


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 593 RSNHNYTLVFPESMPLQGYC 534
           R  H+Y +  PE +PL  YC
Sbjct: 278 RRQHSYLITCPELIPLLQYC 297


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 217 DYPIYHSVPETRFRVSTCRYTLECTR 294
           DY +Y+SVP    +V+ CR  L C R
Sbjct: 239 DY-LYYSVPCPWLQVNLCRILLACER 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,190
Number of Sequences: 5004
Number of extensions: 67939
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)