Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30601
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1803 + 39985439-39985701,39986582-39987971                       33   0.26 
01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546     29   4.3  
12_01_0245 - 1829982-1830995                                           29   5.6  
03_02_0246 - 6772369-6772808,6773223-6775788                           29   5.6  
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741...    28   9.8  
05_01_0555 + 4867494-4867577,4868987-4869607                           28   9.8  
03_05_0306 - 22956474-22956980                                         28   9.8  

>01_06_1803 + 39985439-39985701,39986582-39987971
          Length = 550

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 423 NVDCSQAIEHYKLNADPLKNPYVPKQKPESTRNNQKSTISLKRHTFR 563
           +V C    +H++ N D +  P +P  +  S+R++  ST   +RH F+
Sbjct: 224 SVVCDWLYQHWQGNLDEVSKPKLPLVRLMSSRSDHSSTSFTRRHVFK 270


>01_06_1382 - 36856606-36857484,36857962-36858066,36858932-36859546
          Length = 532

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 339 REGHQGASFLCTNGTLFDQAKFACDWWYNVDC-SQAIEHYKLNADPLKNPYVPKQKPEST 515
           ++GH G  F+C + T+ D  + A      V C + +I  +     P+K   + +++ +  
Sbjct: 329 KKGHPGVLFVCNHRTVLDPVEVAVALRRKVSCVTYSISKFSELISPIKAVALSREREKDA 388

Query: 516 RN 521
            N
Sbjct: 389 EN 390


>12_01_0245 - 1829982-1830995
          Length = 337

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 795 ESKIPGNTFFRKGLIG 748
           +S +P NTFFR+G++G
Sbjct: 283 DSTVPNNTFFRRGVVG 298


>03_02_0246 - 6772369-6772808,6773223-6775788
          Length = 1001

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = -3

Query: 587 NHNYTLVFPESMPLQGYCTLLVVPGGFWFLFRHVGIFQWISVQFVMFNGL*AVNVVPPVA 408
           N+N T   P ++P       L + G F+F        QW  ++++  +G      +PP  
Sbjct: 138 NNNLTGALPAALPNLTNLVHLHLGGNFFFGSIPRSYGQWSRIKYLALSGNELTGEIPPEL 197

Query: 407 GELGLVEQSSVG 372
           G L  + +  +G
Sbjct: 198 GNLTTLRELYLG 209


>07_03_1709 -
           28873172-28873327,28873519-28873584,28874067-28874127,
           28875406-28875462,28876301-28876531,28876685-28876799,
           28876897-28877136,28877222-28877316,28877406-28877585,
           28877663-28877839,28877920-28878890
          Length = 782

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 133 IGGRRAHIFVNRPRQKRLRRVARQSTPSRQPY 38
           +GG  AH F+ RPR +R    +  +  SRQ Y
Sbjct: 333 LGGDEAHKFMGRPRLERADFASMMNPGSRQIY 364


>05_01_0555 + 4867494-4867577,4868987-4869607
          Length = 234

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 28  GEMGKAVLRALTGALLCGVVSDAAYLQRYEPYGLQF 135
           G  G  V++A+T  +   V + AAY  R EP+ L F
Sbjct: 78  GGGGGRVIQAITMLVATAVTAQAAYRARREPWDLAF 113


>03_05_0306 - 22956474-22956980
          Length = 168

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -1

Query: 415 QSQANLAWSNRVPLVQRNEAPW*PSRPSWHTW*A*HPVSTFAYIPGCIGTCSHEIESPER 236
           ++Q + AWS R       E  W   RP++ TW +    ++ +  PG +G    E   P  
Sbjct: 56  KAQEHGAWSRRASPASWGEPRWLARRPAFPTWESSRKEASGSSRPGGMGWQKREGGDP-- 113

Query: 235 SGRWGSPR 212
            G W   R
Sbjct: 114 -GGWRRAR 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,061,771
Number of Sequences: 37544
Number of extensions: 446294
Number of successful extensions: 1211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)