Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30601
(796 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.087
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16) 29 4.3
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 28 7.6
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 34.7 bits (76), Expect = 0.087
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +3
Query: 258 CEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYNVDC 434
C++ P G Y + C+ + CH+ ++ C G L+++ CDW NVDC
Sbjct: 76 CKYKP--DGEYRDPYDACRGFIHCHNYNASYKP----CPGGLLYNEKTKQCDWPRNVDC 128
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 31.5 bits (68), Expect = 0.81
Identities = 24/87 (27%), Positives = 33/87 (37%)
Frame = +3
Query: 246 DSISCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYN 425
D+ C+ P G YA+ C ++ C H+ C G + K ACDW
Sbjct: 1234 DTYFCKEKP--NGHYADPRD-CSRFYQCD---AFHRAFLHRCPAGLKWSVKKTACDWPRY 1287
Query: 426 VDCSQAIEHYKLNADPLKNPYVPKQKP 506
VDC + + P P P KP
Sbjct: 1288 VDCDRT-----TSTPPTPTPLTPTTKP 1309
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +3
Query: 246 DSISCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYN 425
D+ C+ P G YA+ C ++ C H+ C+ G + K CDW N
Sbjct: 779 DTTFCKDKP--NGYYADPRD-CSRFYQCD---AFHRAFLHRCSPGLKWSITKTTCDWPRN 832
Query: 426 VDCSQ 440
VDC +
Sbjct: 833 VDCDR 837
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 249 SISCEHVPI--HP-GMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWW 419
S S HVP P G YA+ + C ++ C+ E C G L+ K CD+
Sbjct: 560 SRSVRHVPRLGKPRGYYADPKD-CAQFYFCYGSAESLLSR---CPRGLLWSVVKKTCDYP 615
Query: 420 YNVDCSQ 440
+ VDCS+
Sbjct: 616 HLVDCSR 622
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Frame = +3
Query: 246 DSISCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYN 425
D+ C+ P H G YA+ C ++ C H+ C +G + K ACD
Sbjct: 1339 DTTFCKDRP-H-GHYADPRD-CSRFYQCD---ASHKTFLHRCPDGLKWSVKKTACDLPLY 1392
Query: 426 VDCSQAIEHYKLN-ADPLKNPYVPKQKP 506
VDC + I P +P P KP
Sbjct: 1393 VDCDRTIPTVATGLPSPSPSPPTPTPKP 1420
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/87 (26%), Positives = 33/87 (37%)
Frame = +3
Query: 246 DSISCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYN 425
D+ C+ P G YA+ C ++ C H+ C G + K ACDW
Sbjct: 884 DTTFCKDKP--NGHYADPRD-CSKFYQCD---AFHRAFLHRCPAGLKWSVKKTACDWPRY 937
Query: 426 VDCSQAIEHYKLNADPLKNPYVPKQKP 506
VDC + + P + P KP
Sbjct: 938 VDCDRT-----TSTPPTPTTHTPTIKP 959
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 282 GMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYNVDCSQ 440
G YA+ C + +C +G + C + +D AK C+W VDC Q
Sbjct: 524 GKYADANN-CNGFVMCSNGYIYYMD----CPSNLRYDPAKGRCEWADTVDCGQ 571
>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
Length = 518
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 282 GMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYNVDCS 437
G+YA E C + +C G H+ C G +F+ CDW + V C+
Sbjct: 464 GIYAEKEN-CYGFVLCGGGI-AHKKT---CPPGLIFNTDLMVCDWSHEVKCN 510
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 297 VETGCQAYHVCHDGREGHQGASFLCTNGTLFDQAKFACDWWYNVDCSQAIEHYKLNAD-P 473
++T V H G G+ +S TN D+A+++C N ++ E L + P
Sbjct: 2100 LDTSPDRITVTHPGSYGNTTSSLTITNLVRTDEARYSCK-AINAAGEKSSEQGLLTVNYP 2158
Query: 474 LKNPYVPKQKPESTRN 521
K ++ KPE TRN
Sbjct: 2159 PK--FLESLKPEETRN 2172
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/72 (20%), Positives = 28/72 (38%)
Frame = +3
Query: 219 LPHLPLRSGDSISCEHVPIHPGMYANVETGCQAYHVCHDGREGHQGASFLCTNGTLFDQA 398
+P+ + G + + + P + + C ++ C H+ C +G +
Sbjct: 99 MPNWRIEKGMCVDNNYCLLLPNGHYHDPRNCSRFYQCD---AFHKAFLHSCPSGLKWSVT 155
Query: 399 KFACDWWYNVDC 434
K CDW VDC
Sbjct: 156 KTTCDWPRYVDC 167
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,758,274
Number of Sequences: 59808
Number of extensions: 533155
Number of successful extensions: 1828
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1824
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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