Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30601
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    29   0.066
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   7.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 28.7 bits (61), Expect = 0.066
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 426  VDCSQAIEHYKLNADPLKN---PYVPKQKPESTRNNQKST 536
            +DCS   E+Y+L     KN   P V  +  +++ NN K T
Sbjct: 963  IDCSTQSEYYELEVKDQKNGKPPSVVSRSTQTSANNDKDT 1002


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 628 ICDVCK*LKYKHDQIT 581
           +CD C+  +Y HD+ T
Sbjct: 469 VCDQCEEYEYVHDEYT 484


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 13  ASNMCGEMGKAVLRALTGALLCGVVSDAA 99
           AS++      A   + TGAL  G+VSD A
Sbjct: 295 ASDILWTQASAKAISETGALFFGLVSDTA 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,233
Number of Sequences: 438
Number of extensions: 5222
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)