Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30601
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    32   0.38 
At1g69500.1 68414.m07986 cytochrome P450 family protein similar ...    29   3.6  
At1g36990.1 68414.m04611 expressed protein contains PS00070: Ald...    29   4.7  
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot...    28   8.2  
At2g29910.2 68415.m03633 F-box family protein contains F-box dom...    28   8.2  
At2g29910.1 68415.m03632 F-box family protein contains F-box dom...    28   8.2  

>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 390 DQAKFACDWWYNV-DCSQAIEHYKLNADPL-KNPYVPK 497
           DQ ++ACD W    D S +++ Y L++ P+ +  YVPK
Sbjct: 378 DQGRYACDSWNTPRDSSFSVDRYGLSSAPVEREQYVPK 415


>At1g69500.1 68414.m07986 cytochrome P450 family protein similar to
           Cytochrome P450 86A2 (SP:O23066) [Arabidopsis
           thaliana]contains Pfam profile: PF00067: Cytochrome P450
          Length = 478

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 452 LQTER*SIEKSLRAETETRIHQEQPEEYNIPEE--AYFQGILKYNCDLIVFIFQLLAHIT 625
           L +E   +EK     T T +HQ   E++N   E    F G+L Y  D +  +  L A IT
Sbjct: 284 LYSELQELEKESAEATNTSLHQYDTEDFNSFNEKVTEFAGLLNY--DSLGKLHYLHAVIT 341

Query: 626 DILNL 640
           + L L
Sbjct: 342 ETLRL 346


>At1g36990.1 68414.m04611 expressed protein contains PS00070:
           Aldehyde dehydrogenases cysteine active site; similar to
           high molecular mass nuclear antigen (GI:2754696) [Gallus
           gallus];similar to streptococcal hemagglutinin
           (GI:8885520) [Streptococcus gordonii] similar to
           proteophosphoglycan (GI:5420389) [Leishmania major]
          Length = 581

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 31  EMGKAVLRALTGALLCGVVSDAAYLQRYEPYGLQFEQALIRKPLREHEKPQ 183
           E+   + +A TG+L     +  +      P GL   +AL++ P R H  PQ
Sbjct: 236 EVPNVIEKACTGSLTSPKANAVSAGTLTGPSGLNMAEALVQAPARTHTPPQ 286


>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
           similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
           6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
           subtilis}; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 511

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 394 WSNRVPLVQRNEAPW*PSRPSWH 326
           W    P     E+PW P RP WH
Sbjct: 189 WKAAKPDEPSWESPWGPGRPGWH 211


>At2g29910.2 68415.m03633 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 335

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 339 REGHQGASFLCTNGTLFDQAKFACDWWYNVDCSQAIE 449
           RE H G  F   N    D + +  D WY VD    +E
Sbjct: 216 REAHDGCWFRTPNLVYLDYSSYVPD-WYEVDLGSLVE 251


>At2g29910.1 68415.m03632 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 352

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 339 REGHQGASFLCTNGTLFDQAKFACDWWYNVDCSQAIE 449
           RE H G  F   N    D + +  D WY VD    +E
Sbjct: 216 REAHDGCWFRTPNLVYLDYSSYVPD-WYEVDLGSLVE 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,019,675
Number of Sequences: 28952
Number of extensions: 356856
Number of successful extensions: 939
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)