Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30599
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    29   0.57 
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    29   0.76 
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    29   1.0  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    28   1.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.3  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   3.1  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    26   5.4  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    26   7.1  
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    26   7.1  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    26   7.1  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.4  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   9.4  

>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 387 TTRSFYEEITPFTNKPIKINTDIDTEKVIDKK 482
           T    + E  P TN+P +  T+ID  K +++K
Sbjct: 165 TASQLFSEQPPKTNEPTETETEIDANKAVEEK 196


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 536 DHDRLAIHCSHFWTEILNFFINNFLCIDICINF 438
           D+D   +   HF+ EIL+ F  N   +D+  NF
Sbjct: 76  DNDLAILEMIHFFVEILDSFFGNVCELDLIFNF 108


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 363 NNTYKQKQTTRSFYEEITPFTNKPIKINTDIDTEK 467
           +N  +Q+++ +SF+  ITP  NKP K   DI +EK
Sbjct: 729 HNKQQQRRSIKSFFSCITP--NKPTKDVNDILSEK 761


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 491 FRSKSGYSESQGDRDHLKESVTHMRDHDP 577
           F S +  S  Q  R++L +S + +RDHDP
Sbjct: 240 FYSWTSSSSLQHTRENLHDSTSSLRDHDP 268


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
 Frame = -1

Query: 581 QPGHGHACVSRFL*DDHDRLAIHCSHFWTEILNFFINNFLCI--DICINFNWLVCERSNF 408
           Q GH     +++  +++     +  HF  E+L+++ ++ + I  D   NF+ ++C     
Sbjct: 436 QNGHNICTFAKWCINNNLDEPSNLKHF-REMLDYYSSHNVTISEDDLKNFSLVLCTHVAK 494

Query: 407 LVEAASSLFLFIRVVIIAVCDAFCDRFN 324
           + E  +S+F    V    VC++FC  F+
Sbjct: 495 VNEKTNSIFRTYEVHGCEVCNSFCLLFD 522


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 502 FGPKSSIFLSITFSVSISVLILIGLFVNGVISS 404
           F PKS   + +TF+VS+S L L   ++ G  SS
Sbjct: 103 FSPKSFFLVYLTFAVSVSCLCL--FYIKGHASS 133


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 124 NIENRETSTDVDQSYGQRDNETYRDGHRYYRRRNETDMNT 243
           ++E     +DVD +YG+ D+++Y+   R     N+T   T
Sbjct: 17  DLEEYSDYSDVD-NYGEEDDDSYKPAPRIRINNNKTKAQT 55


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 324 IKPVTESITDGYNNNTYKQKQTTRSFYEEITPFTNKPIKINTDID 458
           +K   + +  G  NN  +   TT+S+ EE      K + ++ D D
Sbjct: 144 LKTRQDFVLKGQQNNWKRYNPTTKSYLEEFESQKEKLVYLSADSD 188


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
 Frame = -2

Query: 505 TFGP---KSSIFLSITFSVSISVLILIGL 428
           TF P   +++ FLSI FSVS+ V+ LIGL
Sbjct: 177 TFSPPPKRANYFLSICFSVSV-VVSLIGL 204


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 149 PMSIKVMDRETTRLIGMDTDIID 217
           P+  K ++  T R++GMD DI++
Sbjct: 95  PLKSKHLETATARIMGMDIDIVN 117


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 498 PKVATVNRKAIVIISKKA*HTCVTMTRLD 584
           P+ A V RK +   S+ A   CVT+ +LD
Sbjct: 88  PENANVRRKMLYASSRAAFVRCVTLAKLD 116


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 228 NRYEHGSLEENNDSTI 275
           +RYEH  + E+NDSTI
Sbjct: 634 DRYEHPKVLEDNDSTI 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,274,330
Number of Sequences: 5004
Number of extensions: 70962
Number of successful extensions: 255
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)