Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30599
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0128 + 27879969-27880143,27880232-27881323,27883562-278836... 31 0.79
01_03_0297 + 14760685-14760821,14761872-14761989 31 0.79
12_01_0662 + 5601147-5601176,5601419-5601517,5601601-5601651,560... 30 2.4
01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135... 30 2.4
09_03_0211 + 13511893-13512259,13512563-13513038 29 3.2
02_05_0405 + 28708077-28708391,28708478-28708573,28709030-287094... 29 4.2
02_01_0766 + 5706714-5707013,5707100-5707217,5708329-5708753 29 4.2
08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693... 29 5.6
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 28 7.4
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294... 28 7.4
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 28 7.4
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188... 28 7.4
02_04_0657 + 24786717-24786924,24786925-24786965,24787379-247875... 28 9.7
>05_07_0128 +
27879969-27880143,27880232-27881323,27883562-27883698,
27884179-27884409,27884707-27884730
Length = 552
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 744 SPPRSHLVLPLNPSSEPFNGPGRHLMSFTDLKSS 643
+PP +++VLP ++ P P RHL++ T SS
Sbjct: 152 APPSTNIVLPSAAAAAPLTPPRRHLLAATSSSSS 185
>01_03_0297 + 14760685-14760821,14761872-14761989
Length = 84
Score = 31.5 bits (68), Expect = 0.79
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 578 VGQIDHGKNAVNQFVNTSPRSGDDFKSVKDMRCL 679
+G + G+ A + V TSPR FK+ +D RCL
Sbjct: 35 IGGVGGGEEATRRVVLTSPREPIKFKNTEDGRCL 68
>12_01_0662 +
5601147-5601176,5601419-5601517,5601601-5601651,
5602822-5602995,5603869-5603928,5604759-5604800
Length = 151
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 536 DHDRLAIHCSHFWTEILNFFINNFLCIDICINFN 435
D++ + C H + EIL+ F +N +D+ NF+
Sbjct: 84 DNELAYLECIHLFVEILDHFFSNVCELDLVFNFH 117
>01_01_0154 -
1355601-1356102,1356197-1356389,1356465-1356520,
1356997-1357066,1357188-1357314,1357418-1357695,
1357908-1358065,1358166-1358246,1358339-1358410,
1358531-1358602,1358729-1358867,1358987-1360045,
1360170-1360257
Length = 964
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 279 KGPQNRRLWNSGDVNIKPVTESITDGYNNNTYKQKQTTRSFYEEITPFTNK 431
+GP N L +++ I GY +N + + R Y+E+ TNK
Sbjct: 556 QGPMNNSLEQQNEMSTSTSHVLINSGYGDNVSLRLENRRFTYKELEKITNK 606
>09_03_0211 + 13511893-13512259,13512563-13513038
Length = 280
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 140 KHRPMSIKV--MDRETTRLIGMDTDIIDDVMKQI 235
+HR + V M+R TT I TD++DDV QI
Sbjct: 242 RHRDKGLYVYSMERGTTAAINPSTDLVDDVAAQI 275
>02_05_0405 +
28708077-28708391,28708478-28708573,28709030-28709450,
28710051-28710141,28710483-28710819,28710905-28711053,
28711782-28712295
Length = 640
Score = 29.1 bits (62), Expect = 4.2
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 11/140 (7%)
Frame = +1
Query: 127 IENRETSTDVDQ--SYGQRDNETYRDGHRYYRRRNETDMNTDH-SKRTMIAQSIKVR--- 288
IE +T D D+ Q+ + RY M DH ++R + +K++
Sbjct: 135 IELEKTRVDYDERKKLEQQRAQVKSQMSRYEDELARKRMQADHEAQRVRNQELVKMQEES 194
Query: 289 --KTEDYGTAVT*TLNRSQKASQTA--IITTRINKNKLLA-ASTRKLLRSQTSQLKLIQI 453
+ E A+ + ++ + A I+ I + K+LA A+ R L+ QT
Sbjct: 195 AIRQEQMRRAIEEQIQEERRKTDRAKAIVEKEIEQEKILAEANARIKLKKQTED------ 248
Query: 454 SIQRKLLIKKLRISVQKWLQ 513
++R+LLI+ + +KW+Q
Sbjct: 249 -VERRLLIEGAKAEKEKWVQ 267
>02_01_0766 + 5706714-5707013,5707100-5707217,5708329-5708753
Length = 280
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 596 GKNAVNQFVNTSPRSGDDFKSVKDMRCLPGPLNGSEDGFRGKTKWDLGGESS 751
GK+ +Q V P D+F S KD++ ++G G R + +GG ++
Sbjct: 4 GKSLSSQIVEMQPEWRDNFLSYKDLKKRLNLISGGAAGERASKRRRVGGATA 55
>08_02_0981 +
23266174-23266689,23268389-23268549,23269068-23269309,
23270180-23270284,23270746-23270902,23271860-23272028,
23272598-23272638,23273151-23273216,23273524-23273779
Length = 570
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 775 VTIEVGLVTTLTPKIPFGLAPEPIFRTIQR 686
V E G T TP FG+AP+P +I R
Sbjct: 179 VGCEFGFSATKTPDATFGIAPDPTVESILR 208
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 521 QGDRDHLKESVTHMRDHDPVGQIDHGKNAVNQFVNTSPRSGDDFKSVKDMR 673
+GDRD + TH+ ++D G D G N ++ N + G+ S D R
Sbjct: 447 RGDRDRISRERTHIDENDKEGNRDRG-NQKHEDYNRYCKPGERSSSRHDDR 496
>04_04_1374 -
33028790-33028951,33029033-33029087,33029402-33029466,
33029558-33029701,33029825-33029878,33029971-33030220,
33030340-33030446,33031206-33031216,33032682-33032796,
33032897-33033005,33033088-33033203,33033288-33033647
Length = 515
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 339 ESITDGYNNNTYKQKQTTRSFYEEITPFTNKPIKINTDIDTEKVIDKKIEDFGPKV--AT 512
E+I D YN Q +T R +YE K + + +K ++ K ++ K+ A
Sbjct: 355 ETIVDEYNRLLASQLETQREYYEARLSEAKKEKEQHISDAVDKAVNDKSKEIQQKIENAM 414
Query: 513 VNRKAIVIISKK 548
+ +K + +++K
Sbjct: 415 LEKKKLADMNEK 426
>02_03_0180 -
16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 775 VTIEVGLVTTLTPKIPF-GLAPEPIFRTIQRPWKTPH 668
VT++ G V T+T K+P+ L EP+ I R + H
Sbjct: 144 VTVKAGFVGTITLKVPWKSLGKEPVIVLIDRLFVLAH 180
>02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,
1884442-1884666,1884844-1885224,1885282-1885989,
1886546-1886839,1887211-1887709,1887949-1888721
Length = 1257
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +2
Query: 524 GDRDHLKESVTHMRDHDPVGQIDHGKNAVNQFVNTSPRSGDDFKSVKD 667
GD D + + D D ++D G++ + + V + GD + KD
Sbjct: 893 GDTDSTADGLDEEMDDDSADEVDEGQDDLKESVAHESKDGDGAEVTKD 940
>02_04_0657 +
24786717-24786924,24786925-24786965,24787379-24787521,
24787597-24787774,24788054-24788123,24788197-24788345,
24788491-24788586,24789213-24789283,24789879-24789940,
24790175-24790238,24790326-24790410,24790515-24790641,
24790714-24790775,24790863-24790923,24790987-24791147,
24791355-24791648
Length = 623
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -1
Query: 383 FLFIRVVIIAVCDAFCDRFNVYVTAVP*SSVLRTFIDCAIIVLFE*SVFISVSLRRL 213
F+F+ + + AVCD D + V +T V S I + V++E S + S+ +
Sbjct: 46 FVFLLLTVYAVCDDVVDSWIVSITGVNIQSSEEVAIKLVMCVVYE-STYSETSVNNM 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,975,264
Number of Sequences: 37544
Number of extensions: 455119
Number of successful extensions: 1368
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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