Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30599
(788 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_36320| Best HMM Match : LUC7 (HMM E-Value=0.083) 32 0.46
SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2) 31 1.1
SB_7667| Best HMM Match : DUF827 (HMM E-Value=0.33) 31 1.1
SB_51370| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12) 30 1.9
SB_11359| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_16469| Best HMM Match : EGF (HMM E-Value=4e-09) 29 3.2
SB_12753| Best HMM Match : M (HMM E-Value=0.0006) 25 5.3
SB_18672| Best HMM Match : F-box (HMM E-Value=0.002) 29 5.7
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 5.7
SB_47009| Best HMM Match : WSC (HMM E-Value=0.16) 29 5.7
SB_46510| Best HMM Match : Vicilin_N (HMM E-Value=1.4) 29 5.7
SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0) 28 7.5
SB_12894| Best HMM Match : FH2 (HMM E-Value=1.9) 28 7.5
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_4107| Best HMM Match : M (HMM E-Value=8e-22) 28 9.9
>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 39.5 bits (88), Expect = 0.003
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Frame = +3
Query: 273 IYKGPQNRRLW--NSGDVNIKPVTESIT--DGYNNNTYKQKQTTRSFYEEITPFTNKPIK 440
IY+G N +L+ N+G +SI DG +N+Y S Y+ ITP NKPI+
Sbjct: 709 IYRGEANNKLYMLNTGLNESTSSEQSIDSIDGPLSNSYNTNIPIPSRYQLITPTLNKPIQ 768
Query: 441 INTDIDTEKVIDKKIED 491
I DT+ ++IED
Sbjct: 769 IPDLSDTKAEFVQRIED 785
>SB_36320| Best HMM Match : LUC7 (HMM E-Value=0.083)
Length = 216
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 121 RNIENRETSTDVDQSY-GQRDNETYRDGHRYYRRRNETDMNTDHSKRTMIAQSI 279
R E + ++D+ G RD + RD R RRR+ + + DH +R+++A+S+
Sbjct: 114 REREREQERREMDKRRSGDRDRRSSRDADRGRRRRSRS-RSRDHKRRSLLARSL 166
>SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)
Length = 889
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +1
Query: 139 ETSTDVDQSYGQRDNETYRDGHRYYRRRNETDMNTDHSKRTMIAQSIKVRKTEDYGTAV 315
ET + Y + +ETYR H YR NE+ NT H + + + R+T+ Y TA+
Sbjct: 548 ETYRHTHERY-RHTHETYRLTHERYRHTNESYRNT-HERYRHTHE--RYRRTQAYSTAI 602
>SB_7667| Best HMM Match : DUF827 (HMM E-Value=0.33)
Length = 806
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/81 (29%), Positives = 38/81 (46%)
Frame = +3
Query: 303 WNSGDVNIKPVTESITDGYNNNTYKQKQTTRSFYEEITPFTNKPIKINTDIDTEKVIDKK 482
W DV + + I D N+ K K+T +S +EI + K I D+EK I K+
Sbjct: 560 WKEADVEL---SREIRDEGNHVCKKVKETGQSISKEIQD-SEKSISKEIQ-DSEKSISKE 614
Query: 483 IEDFGPKVATVNRKAIVIISK 545
+ DF + V +K + +K
Sbjct: 615 LRDFKQSLREVRQKLDDVTNK 635
>SB_51370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 285 PQNRRLWNSGDVNIKPVTESIT--DGYNNNTYKQKQTTRSFYEEITPFTNKPIKINTDID 458
PQ +R W S N + ++ ++ DG + + + TR F E PF K + +ID
Sbjct: 166 PQAKRRWKSFMTNNRALSVAVLGKDGVGKSAFTVRALTRRFIGEYDPFLELNYKHSMEID 225
>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
Length = 695
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +3
Query: 306 NSGDV--NIKPVTESITDGYNNNTYK 377
N+GD+ N+ PVT +DGY N YK
Sbjct: 131 NTGDIASNVLPVTAKCSDGYKFNNYK 156
>SB_11359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 160 QSYGQRDNETYRDGHRYYRRRNETDMNTDHSKRTMIAQSIKVRKTEDYGT 309
+ +G ++T ++ + R+ T NT+H ++A+ V+ TE +GT
Sbjct: 74 EHHGTVRHDTVKNTEHHGTARHVTTKNTEHHGTNIMARCYTVKNTEHHGT 123
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/80 (23%), Positives = 35/80 (43%)
Frame = +1
Query: 133 NRETSTDVDQSYGQRDNETYRDGHRYYRRRNETDMNTDHSKRTMIAQSIKVRKTEDYGTA 312
NR+TS VDQ Q ++ D +N+ H T +A + +K+ YG
Sbjct: 2368 NRKTSHSVDQETEQSSDKNVNDKDE-SAMQNQITALVPHLLPTTVAYGVPSKKSSAYGIK 2426
Query: 313 VT*TLNRSQKASQTAIITTR 372
++ S +S+T + ++
Sbjct: 2427 EVTGISMSVGSSKTEAVASK 2446
>SB_16469| Best HMM Match : EGF (HMM E-Value=4e-09)
Length = 902
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 345 ITDGYNNNTYKQKQTTRSFYEEITPFT 425
I D YNNN Y T R Y+ + P T
Sbjct: 447 IYDNYNNNIYPSPSTARIAYKRLNPCT 473
>SB_12753| Best HMM Match : M (HMM E-Value=0.0006)
Length = 304
Score = 25.0 bits (52), Expect(2) = 5.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 375 KQKQTTRSFYEEITPFTNKPIKINTDIDTEKVIDKKIEDFGPKVATV 515
KQ T S EEIT T KP + EK++ +I ++A +
Sbjct: 79 KQALTKESLLEEITHVTKKP----EFFEKEKILQDQITSLKSQIACI 121
Score = 22.2 bits (45), Expect(2) = 5.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 327 KPVTESITDGYNNNTYKQKQTTR 395
+ + ESIT Y + K+KQ R
Sbjct: 29 RTIPESITSDYEKHCAKEKQLRR 51
>SB_18672| Best HMM Match : F-box (HMM E-Value=0.002)
Length = 699
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 258 NNDSTIYKGPQNRRLWNSGDVNIKPVTESITDGYNNNTYKQKQTTRSFYEEITPFTNKPI 437
NN+S + GP R + +IKP S DG++ + +K K + ++ P+ N +
Sbjct: 28 NNNSNVLVGPNEFRKIKTA--SIKPYASSEKDGFHTDKFKTKNS--AWTPVFNPYNNNKL 83
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 339 ESITDGYNNNTYKQKQTTRSFYEEITPFTNKP 434
E IT G+++N +Q+ TRS YE IT +T P
Sbjct: 573 EYITCGHDSNPSRQR--TRSRYEHITKWTRPP 602
>SB_47009| Best HMM Match : WSC (HMM E-Value=0.16)
Length = 852
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 751 TTLTPKIPFGLAPEPIFRTIQRPWKTP 671
TT+TPKIPF L P F + P+ P
Sbjct: 98 TTMTPKIPFNLTVHP-FSMVVPPFSQP 123
>SB_46510| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
Length = 157
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = +1
Query: 121 RNIENRETSTDVDQSYGQRDNETYRDGHRYYRRRNETDMNTDHSKRTMIAQ 273
+ + R+TS++ GQ+D+E D + R+R + ++ T +++R M+A+
Sbjct: 43 QRMRKRQTSSEYRVRKGQKDSECELDDEQRARKR-QRNLETLNAQRAMMAE 92
>SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 595 VVYLSNRVMVTHVCHAFFEMITIALRFTVATFGPKSS 485
VVY+ R V +VC + + T+ LRF V F P ++
Sbjct: 380 VVYVRVRQYVVYVCVRQYVVYTLILRFGVKQFKPSTN 416
>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 1589
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 264 DSTIYKGPQNRRLWNSG 314
DSTIY +NRR WN G
Sbjct: 331 DSTIYTREENRRTWNYG 347
>SB_12894| Best HMM Match : FH2 (HMM E-Value=1.9)
Length = 408
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 345 ITDGYNNNTYKQKQTTRSFYEEITPFTNKPIKINTDIDTEKVIDKKIEDFGPK 503
+ DG + + YK K +Y+E K +KI+ ++ T++ + + DF K
Sbjct: 95 LMDGDDGSKYK-KHAKAKYYKEYNQKKEKVVKIDRNVFTKQHLKDALRDFKDK 146
>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +1
Query: 130 ENRETSTDVDQSYG-QRDNETYRDGHRYYRRRNETDMNTDHSKRTMIAQSIKVRKTEDYG 306
+++E+ D+ G + ++ + D +ETD + S + + I V + G
Sbjct: 74 KSKESEEVADKGSGSETESGSESDSETESETESETDSSDSESDSKKVGK-INVEELPKLG 132
Query: 307 TAVT*TLNRSQKASQTAIITTRINKNKLLAASTR 408
TA + QKA + A + T + K ++ + R
Sbjct: 133 TAASFKSRFEQKAEEDAKVKTSVQKVEVQSGKAR 166
>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
Length = 2039
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +1
Query: 181 NETYRDGHRYYRRRNETDMNTDHSKRTMIAQSIKVRKTEDYGTA----VT*TLNRSQKAS 348
NE RD H +R ++D + +KR + S K+ +TE+ +T L+ S++A
Sbjct: 1235 NEVRRDNHNLKQRLADSDGQKEAAKREIANLSRKMAETEEDNRVREKDLTTALDESRRAE 1294
Query: 349 QTAI 360
A+
Sbjct: 1295 AKAV 1298
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,979,043
Number of Sequences: 59808
Number of extensions: 554571
Number of successful extensions: 1661
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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