Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30599
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical pr...    33   0.31 
L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U97408-3|AAB93343.1|  339|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine r...    29   2.9  
U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical p...    28   6.6  
U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine rece...    28   6.6  
Z78067-9|CAB01528.2|  450|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z74045-2|CAA98553.1|  155|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z49911-3|CAA90126.2|  735|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U85911-1|AAB94330.1|  155|Caenorhabditis elegans inhibitor of ap...    28   8.8  
U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical
           protein F54B8.8 protein.
          Length = 285

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 524 LAIHCSHFWTEILNFFINNFLC-IDICINFNWLVCERSNFLVEAASSLFLFIRVVIIAVC 348
           L ++C +  T+ +    +NF C I+ C N  W   ER   ++   SS+ LF+R+ ++  C
Sbjct: 147 LFVYCKN--TDDIPLECDNFHCMINQCFNNYWKRHERIACILLGCSSILLFLRLFVLTYC 204


>L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical
           protein C06G4.1 protein.
          Length = 886

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = +1

Query: 127 IENRETSTDVDQSYGQRDNETY--RDGHRYYRRRNETDMNTDHSK---RTMIAQSIKVRK 291
           + N E   D D +   +DN  Y  +D  +++R R+ +  N  H K   R     S + R+
Sbjct: 342 MRNSEDFEDYDITQTDQDNHFYNDKDSGKHHRHRHRSKNNKKHKKHYDRNESGNSSECRE 401

Query: 292 TEDY 303
            +DY
Sbjct: 402 EDDY 405


>U97408-3|AAB93343.1|  339|Caenorhabditis elegans Hypothetical
           protein F48A9.1 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +1

Query: 130 ENRETSTDVDQSYGQRDNETYRDGHRYYRRRNETDMNTDH--SKRTMIAQSIKVRKTEDY 303
           E+R   T+  +   +R+NE  ++  RY+ RR+++    D   S R++  +S+       +
Sbjct: 219 EDRRKDTEELRDERKRENEQNQNRERYHHRRSKSSNRDDASVSHRSLRHRSMSPASRRSF 278

Query: 304 GTAV 315
           GT++
Sbjct: 279 GTSL 282


>AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 57 protein.
          Length = 280

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = -1

Query: 470 NFLC-IDICINFNWLVCERSNFLVEAASSLFLFIRVVIIAVCDAFCDRFNVYVTAVP*SS 294
           NF C ++ C    W+V E+  F V ++ S  LF+R   + VC+     FN     +  ++
Sbjct: 159 NFQCTVNQCYLQYWMVHEQVVFFVISSLSTILFVR---LFVCNFLV--FNQSSKLISKAT 213

Query: 293 VLRTFIDCAIIVLF 252
            +   +DC II++F
Sbjct: 214 QI-ALLDCIIIIIF 226


>U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical
            protein F46F11.1a protein.
          Length = 1339

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 554  THMRDHDPVGQIDH-GKNAVNQFVNTSPRSGDDFKSVKDMRCLPGPLNGSEDGFRGKTKW 730
            TH    D +  ++     A+++  NT+    DD K+ K  R + G     E+G +   +W
Sbjct: 1015 THNDSEDDLNDVESVNLVALDELNNTTKAMADDGKTAKRQRSVTGAEKSMEEGDKPHGEW 1074

Query: 731  DLGG 742
               G
Sbjct: 1075 KGNG 1078


>U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein77 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -2

Query: 622 NKLVYSILSVVYLSNRVMVTHVCHAFFEMITIALRFTVATFGPKSSIFLSITFSVSI 452
           N  +  IL++VY+   ++   + H   E + +     +  +    SI+LSI   V+I
Sbjct: 62  NVAIIFILTIVYIPAIIIGESIYHPMVETVLLTTAMNLKVYNEFQSIYLSINRLVAI 118


>Z78067-9|CAB01528.2|  450|Caenorhabditis elegans Hypothetical
           protein ZC412.1 protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 473 NNFLCIDICINFNWLVCERSNFLVEAASSLFLFIRVVIIAVCDAFC 336
           N  LC D C  FNW   E S       ++  L I+++I A+  +FC
Sbjct: 174 NVTLCGDFCGEFNWQSDEISKL---TYTTSLLIIQLIIPAIIMSFC 216


>Z74045-2|CAA98553.1|  155|Caenorhabditis elegans Hypothetical
           protein T27F2.3 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/56 (26%), Positives = 33/56 (58%)
 Frame = +1

Query: 226 ETDMNTDHSKRTMIAQSIKVRKTEDYGTAVT*TLNRSQKASQTAIITTRINKNKLL 393
           E D   +H+KR    + +++ K +D       T+N + + SQTA+I T++ +++++
Sbjct: 69  EDDPWYEHTKRDEPCEFVRIGKLDDSEL----TINDTVRLSQTAMIMTKLFEHEMM 120


>Z49911-3|CAA90126.2|  735|Caenorhabditis elegans Hypothetical
           protein M28.4 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 535 ITIALRFTVATFGPKSSIFLSITFSVSISVLILIGLF 425
           + +A +FT+ T  PK +  + + F VSI V I++ LF
Sbjct: 369 VAVASKFTLPTQFPKLATIVLVGFYVSIVVSIVLLLF 405


>U85911-1|AAB94330.1|  155|Caenorhabditis elegans inhibitor of
           apoptosis homolog protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/56 (26%), Positives = 33/56 (58%)
 Frame = +1

Query: 226 ETDMNTDHSKRTMIAQSIKVRKTEDYGTAVT*TLNRSQKASQTAIITTRINKNKLL 393
           E D   +H+KR    + +++ K +D       T+N + + SQTA+I T++ +++++
Sbjct: 69  EDDPWYEHTKRDEPCEFVRIGKLDDSEL----TINDTVRLSQTAMIMTKLFEHEMM 120


>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 778 GVTIEVGLVTTLTPKIPFGLAPEPIFRTIQRPWKTPHVLH*FK 650
           G  IE+   TT +  I  G  P  I++   R W+T + +  F+
Sbjct: 44  GYVIEINGTTTKSMDISKGFVPGEIYKVSIRGWRTQYTVKTFR 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,284,986
Number of Sequences: 27780
Number of extensions: 408908
Number of successful extensions: 1357
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)