Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30599
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57720.1 68418.m07215 transcriptional factor B3 family protei...    33   0.16 
At3g16470.1 68416.m02101 jacalin lectin family protein contains ...    30   1.5  
At3g20430.1 68416.m02587 expressed protein                             29   2.7  
At3g50380.1 68416.m05511 expressed protein                             29   3.5  
At2g32850.2 68415.m04025 protein kinase family protein contains ...    29   3.5  
At5g42900.2 68418.m05229 expressed protein similar to unknown pr...    29   4.6  
At1g73450.1 68414.m08503 protein kinase, putative similar to nuc...    29   4.6  
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ...    29   4.6  
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil...    28   8.1  
At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00...    28   8.1  
At1g35080.1 68414.m04347 hypothetical protein                          28   8.1  

>At5g57720.1 68418.m07215 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 300

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 21/106 (19%), Positives = 45/106 (42%)
 Frame = +1

Query: 160 QSYGQRDNETYRDGHRYYRRRNETDMNTDHSKRTMIAQSIKVRKTEDYGTAVT*TLNRSQ 339
           Q     ++ET  DG  +     +TD N   S     +  +     +DY TA+   +N++ 
Sbjct: 117 QEISDDEDETNGDGDPHMEEEGDTDENMIVSLSLGSSDEVGDDDDDDYDTAICDEVNKAS 176

Query: 340 KASQTAIITTRINKNKLLAASTRKLLRSQTSQLKLIQISIQRKLLI 477
            +S+   +T +   + L + + +  L    +   +   S  R++L+
Sbjct: 177 GSSKKGRVTRKHRDDSLASITPQIFLADPNNPFFISTSSCSRRILV 222


>At3g16470.1 68416.m02101 jacalin lectin family protein contains
           Pfam profile: PF01419 jacalin-like lectin domain;
           similar to myrosinase-binding protein homolog
           [Arabidopsis thaliana] GI:2997767
          Length = 451

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +1

Query: 211 YRRRNETDMNTDHSKRTMIAQSIKVRKTEDYGTAVT*TLNRSQKASQTAIITTRINKNK 387
           Y + ++  + +DH K+T++     V   ++Y TAV+   ++       AI++ +   NK
Sbjct: 347 YEKASKPVLGSDHGKKTLLGAEEFVLGPDEYVTAVSGYYDKIFSVDAPAIVSLKFKTNK 405


>At3g20430.1 68416.m02587 expressed protein 
          Length = 265

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +2

Query: 515 ESQGDRDHLKESVTHMRDHDPVGQIDHGKNAVNQFVNTSPRSGDDFKSVKDMRCLPGPLN 694
           ES  D  + ++   ++ D + V  ++ G+  V+  +++  R  DD   VKD   + G  N
Sbjct: 5   ESLLDAINEEDGFENLEDVEMV-DVEEGEIVVDHDLDSGERQNDDGDGVKDKEAILGEKN 63

Query: 695 GSEDGFRGKTK 727
           G +   + K K
Sbjct: 64  GLQQTNKNKRK 74


>At3g50380.1 68416.m05511 expressed protein
          Length = 3071

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 497 SKSGYSESQGDRDHLKESVTHMRDHDPVGQIDHGKN 604
           +K   S S+G++ H++E V  + D DP  QI    N
Sbjct: 551 TKDPSSSSEGNKKHMREDVKTILDMDPAQQISKTVN 586


>At2g32850.2 68415.m04025 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 670

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 282 GPQNRRLWNSGDVNIKPVTESITDGYNNNTYKQKQTTRS 398
           G  +   W       KPV ES + G NNNT  Q   TRS
Sbjct: 563 GSSDTNSWQPFSDEAKPVMESASKG-NNNTINQSVRTRS 600


>At5g42900.2 68418.m05229 expressed protein similar to unknown
           protein (pir||T05226)
          Length = 245

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 518 SQGDRDHLKESVTHMRDHD--PVGQIDHGKNAVNQFVNTSPRSGDDFKSV 661
           S G    LK+  +H RDHD   VG+    +N VN+ +     S    K+V
Sbjct: 168 SSGSASSLKQLSSHSRDHDQISVGEEVSDQNFVNEGIKGENGSSKKMKTV 217


>At1g73450.1 68414.m08503 protein kinase, putative similar to
           nuclear serine/threonine protein kinase GI:3582644 from
           [Rattus norvegicus]
          Length = 1152

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 133 NRETSTDVD-QSYGQRDNETYRDGHRYYRRRNETDMNTDHSKRTMIAQSIKVRKTED 300
           +R+ + D D QSY +  +E+Y  G RY + ++   +++++ +R  +++     K  D
Sbjct: 472 DRDANKDEDDQSYAE--DESYLSGERYLQSKDAEPISSENDRRLTVSEIYPACKKND 526


>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
           protein 
          Length = 573

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +1

Query: 118 TRNIENRETSTDVDQSYGQRDNETYR---DGHRYYRRRNETDMNTDHSKRTMIAQSIKVR 288
           +R+ E   T  D  ++ G R ++++R   D HR Y+++ + D +     ++ +    + R
Sbjct: 492 SRDKERATTERDWSENSGDRRHKSHREEKDSHREYKQQRDRDSDEFDRGQSSLKSRSRSR 551

Query: 289 KTED 300
            +ED
Sbjct: 552 MSED 555


>At5g17930.1 68418.m02102 MA3 domain-containing protein low
           similarity to SP|Q9P6R9 Cell cycle control protein cwf22
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02847: MA3 domain
          Length = 707

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 500 KSGYSESQGDRDHLKESVT-HMRDHDPVGQIDHGKNAV 610
           KSG      D   + +SVT HM    P G  DHGK+ +
Sbjct: 24  KSGDVIKSEDFRQISDSVTEHMESSSPSGNKDHGKSFI 61


>At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 389

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 691 QRPWKTPHVLH*FKVIAGPWG-CVNKLVYSILSVVYLSN-RVMVTHVCHAFFEMITIAL 521
           Q+ W+T    H  +     WG C+  +VY I  V +     +M  HV    F+MI + L
Sbjct: 196 QKSWRTVKTKHKHRSTNDTWGRCIKGVVYYIAYVYHTRVWCIMSFHVKSEKFDMIKLPL 254


>At1g35080.1 68414.m04347 hypothetical protein
          Length = 386

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 144 IDRCRSKLWTERQRDLSGWTQI 209
           +DR RS LW E   +  GW QI
Sbjct: 83  LDRSRSSLWMEPYGEDGGWVQI 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,171,394
Number of Sequences: 28952
Number of extensions: 378523
Number of successful extensions: 1212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)